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|---|---|---|---|---|---|---|---|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-006 [Transcript ID] ENST00000474237 [bp] 1877 [Protein] 68aa [Translation ID] ENSP00000455500 [CCDS] - [UniProt] H3BPW6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-014 [Transcript ID] ENST00000602685 [bp] 2267 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-007 [Transcript ID] ENST00000493977 [bp] 732 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-003 [Transcript ID] ENST00000366704 [bp] 2534 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-008 [Transcript ID] ENST00000494839 [bp] 583 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
2d7352e2__Gene__OBSCN__ENSG00000154358___Biotype
|
[Name] OBSCN-013 [Transcript ID] ENST00000602832 [bp] 372 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-002 [Transcript ID] ENST00000323180 [bp] 3675 [Protein] 634aa [Translation ID] ENSP00000323152 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31474 [UniProt] Q96BD5 [RefSeq] NM_016621 NP_057705 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-004 [Transcript ID] ENST00000418153 [bp] 2730 [Protein] 680aa [Translation ID] ENSP00000398824 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44578 [UniProt] Q96BD5 [RefSeq] NM_001101802 NP_001095272 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-010 [Transcript ID] ENST00000525438 [bp] 577 [Protein] 26aa [Translation ID] ENSP00000437110 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNW9 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-011 [Transcript ID] ENST00000529782 [bp] 561 [Protein] 63aa [Translation ID] ENSP00000435121 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PLV4 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-007 [Transcript ID] ENST00000529734 [bp] 557 [Protein] 101aa [Translation ID] ENSP00000436157 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PQM3 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-021 [Transcript ID] ENST00000524497 [bp] 555 [Protein] 134aa [Translation ID] ENSP00000431273 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PLU5 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-016 [Transcript ID] ENST00000525676 [bp] 550 [Protein] 93aa [Translation ID] ENSP00000431964 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YCM5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-019 [Transcript ID] ENST00000532010 [bp] 546 [Protein] 9aa [Translation ID] ENSP00000435645 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-020 [Transcript ID] ENST00000531959 [bp] 507 [Protein] 134aa [Translation ID] ENSP00000432916 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A6YYQ2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-008 [Transcript ID] ENST00000527782 [bp] 490 [Protein] 11aa [Translation ID] ENSP00000434687 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNN4 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-009 [Transcript ID] ENST00000533757 [bp] 466 [Protein] 51aa [Translation ID] ENSP00000432406 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PR02 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-018 [Transcript ID] ENST00000532028 [bp] 451 [Protein] 150aa [Translation ID] ENSP00000431621 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YCI1 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-017 [Transcript ID] ENST00000530587 [bp] 1293 [Protein] 116aa [Translation ID] ENSP00000435984 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YEK2 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-013 [Transcript ID] ENST00000532883 [bp] 1051 [Protein] 82aa [Translation ID] ENSP00000432094 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PS51 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-015 [Transcript ID] ENST00000527753 [bp] 592 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-014 [Transcript ID] ENST00000525679 [bp] 565 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-012 [Transcript ID] ENST00000528893 [bp] 457 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-006 [Transcript ID] ENST00000530312 [bp] 276 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-003 [Transcript ID] ENST00000527401 [bp] 8954 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-022 [Transcript ID] ENST00000534766 [bp] 635 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
a489c8db___PHF21A_010__ENST00000525438___Flags
|
[Name] PHF21A-023 [Transcript ID] ENST00000534724 [bp] 390 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135365;r=11:46079141-46119844;t=ENST00000525438
|
22/1438043062635.98_20150728002422-00242-ip-10-236-191-2_419270445_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
b96f5220_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000474706
|
22/1438043062635.98_20150728002422-00283-ip-10-236-191-2_429861391_0.json
|
e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-001 [Transcript ID] ENST00000404625 [bp] 1527 [Protein] 212aa [Translation ID] ENSP00000385675 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
|
e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-201 [Transcript ID] ENST00000258743 [bp] 1182 [Protein] 212aa [Translation ID] ENSP00000258743 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] NM_000600 NP_000591 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
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22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-004 [Transcript ID] ENST00000407492 [bp] 926 [Protein] 136aa [Translation ID] ENSP00000385043 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC21 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
|
e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-005 [Transcript ID] ENST00000401630 [bp] 765 [Protein] 189aa [Translation ID] ENSP00000384928 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MCZ3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-006 [Transcript ID] ENST00000406575 [bp] 649 [Protein] 198aa [Translation ID] ENSP00000385227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC14 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
|
e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-002 [Transcript ID] ENST00000426291 [bp] 574 [Protein] 152aa [Translation ID] ENSP00000405150 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J5B0 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-003 [Transcript ID] ENST00000401651 [bp] 539 [Protein] 122aa [Translation ID] ENSP00000385718 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B4DNV3 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-008 [Transcript ID] ENST00000485300 [bp] 985 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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e706e301_ipt__IL6_004__ENST00000407492___Flags
|
[Name] IL6-007 [Transcript ID] ENST00000464710 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: IL6-004 (ENST00000407492)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136244;r=7:22765503-22771621;t=ENST00000407492
|
22/1438043062635.98_20150728002422-00156-ip-10-236-191-2_422409736_0.json
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015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
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015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
015284a3_t__PDPK1_009__ENST00000460496___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-009 (ENST00000460496)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000460496
|
22/1438042990609.0_20150728002310-00020-ip-10-236-191-2_427510613_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-202 [Transcript ID] ENST00000570156 [bp] 26925 [Protein] 8923aa [Translation ID] ENSP00000455507 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59204 [UniProt] H3BPX2 [RefSeq] NM_001271223 NP_001258152 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-201 [Transcript ID] ENST00000422127 [bp] 24060 [Protein] 7968aa [Translation ID] ENSP00000409493 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58065 [UniProt] Q5VST9 [RefSeq] NM_001098623 NP_001092093 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-001 [Transcript ID] ENST00000284548 [bp] 20432 [Protein] 6620aa [Translation ID] ENSP00000284548 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1570 [UniProt] Q5VST9 [RefSeq] NM_052843 NP_443075 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-011 [Transcript ID] ENST00000366707 [bp] 26933 [Protein] 8925aa [Translation ID] ENSP00000355668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A6NGQ3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-009 [Transcript ID] ENST00000483539 [bp] 4779 [Protein] 1593aa [Translation ID] ENSP00000455688 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQA7 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-002 [Transcript ID] ENST00000366706 [bp] 2983 [Protein] 858aa [Translation ID] ENSP00000355667 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A0MRI8 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-006 [Transcript ID] ENST00000474237 [bp] 1877 [Protein] 68aa [Translation ID] ENSP00000455500 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW6 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-014 [Transcript ID] ENST00000602685 [bp] 2267 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-007 [Transcript ID] ENST00000493977 [bp] 732 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-003 [Transcript ID] ENST00000366704 [bp] 2534 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-008 [Transcript ID] ENST00000494839 [bp] 583 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
3acdb2de__Gene__OBSCN__ENSG00000154358___Flags
|
[Name] OBSCN-013 [Transcript ID] ENST00000602832 [bp] 372 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OBSCN (ENSG00000154358)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000154358;r=1:228208130-228378876
|
22/1438042990609.0_20150728002310-00045-ip-10-236-191-2_440748597_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
d7a7588d_t__PARK7_005__ENST00000377491___Biotype
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491
|
22/1438042990177.43_20150728002310-00134-ip-10-236-191-2_432627762_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-003 [Transcript ID] ENST00000302345 [bp] 3534 [Protein] 401aa [Translation ID] ENSP00000307674 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] NM_001159773 NM_138793 NP_001153245 NP_620148 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-201 [Transcript ID] ENST00000620915 [bp] 3337 [Protein] 401aa [Translation ID] ENSP00000477798 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-001 [Transcript ID] ENST00000392446 [bp] 3252 [Protein] 401aa [Translation ID] ENSP00000376241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-002 [Transcript ID] ENST00000591773 [bp] 1669 [Protein] 401aa [Translation ID] ENSP00000467437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] NM_001159772 NP_001153244 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-016 [Transcript ID] ENST00000588611 [bp] 900 [Protein] 118aa [Translation ID] ENSP00000465816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EKW6 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-008 [Transcript ID] ENST00000588075 [bp] 881 [Protein] 76aa [Translation ID] ENSP00000465769 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EKT2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-021 [Transcript ID] ENST00000586916 [bp] 769 [Protein] 61aa [Translation ID] ENSP00000467970 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EQT4 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
4bfa4ae9_t__CANT1_003__ENST00000302345___Flags
|
[Name] CANT1-020 [Transcript ID] ENST00000590370 [bp] 614 [Protein] 65aa [Translation ID] ENSP00000466637 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMT2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-003 (ENST00000302345)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78991717-79009817;t=ENST00000302345
|
22/1438042990177.43_20150728002310-00087-ip-10-236-191-2_428871243_0.json
|
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