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"""Base class for MultiGraph.""" |
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from copy import deepcopy |
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from functools import cached_property |
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import networkx as nx |
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from networkx import NetworkXError, convert |
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from networkx.classes.coreviews import MultiAdjacencyView |
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from networkx.classes.graph import Graph |
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from networkx.classes.reportviews import MultiDegreeView, MultiEdgeView |
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__all__ = ["MultiGraph"] |
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class MultiGraph(Graph): |
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""" |
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An undirected graph class that can store multiedges. |
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Multiedges are multiple edges between two nodes. Each edge |
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can hold optional data or attributes. |
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A MultiGraph holds undirected edges. Self loops are allowed. |
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Nodes can be arbitrary (hashable) Python objects with optional |
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key/value attributes. By convention `None` is not used as a node. |
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Edges are represented as links between nodes with optional |
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key/value attributes, in a MultiGraph each edge has a key to |
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distinguish between multiple edges that have the same source and |
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destination nodes. |
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Parameters |
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---------- |
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incoming_graph_data : input graph (optional, default: None) |
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Data to initialize graph. If None (default) an empty |
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graph is created. The data can be any format that is supported |
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by the to_networkx_graph() function, currently including edge list, |
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dict of dicts, dict of lists, NetworkX graph, 2D NumPy array, |
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SciPy sparse array, or PyGraphviz graph. |
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multigraph_input : bool or None (default None) |
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Note: Only used when `incoming_graph_data` is a dict. |
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If True, `incoming_graph_data` is assumed to be a |
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dict-of-dict-of-dict-of-dict structure keyed by |
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node to neighbor to edge keys to edge data for multi-edges. |
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A NetworkXError is raised if this is not the case. |
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If False, :func:`to_networkx_graph` is used to try to determine |
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the dict's graph data structure as either a dict-of-dict-of-dict |
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keyed by node to neighbor to edge data, or a dict-of-iterable |
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keyed by node to neighbors. |
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If None, the treatment for True is tried, but if it fails, |
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the treatment for False is tried. |
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attr : keyword arguments, optional (default= no attributes) |
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Attributes to add to graph as key=value pairs. |
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See Also |
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-------- |
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Graph |
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DiGraph |
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MultiDiGraph |
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Examples |
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-------- |
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Create an empty graph structure (a "null graph") with no nodes and |
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no edges. |
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>>> G = nx.MultiGraph() |
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G can be grown in several ways. |
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**Nodes:** |
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Add one node at a time: |
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>>> G.add_node(1) |
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Add the nodes from any container (a list, dict, set or |
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even the lines from a file or the nodes from another graph). |
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>>> G.add_nodes_from([2, 3]) |
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>>> G.add_nodes_from(range(100, 110)) |
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>>> H = nx.path_graph(10) |
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>>> G.add_nodes_from(H) |
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In addition to strings and integers any hashable Python object |
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(except None) can represent a node, e.g. a customized node object, |
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or even another Graph. |
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>>> G.add_node(H) |
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**Edges:** |
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G can also be grown by adding edges. |
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Add one edge, |
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>>> key = G.add_edge(1, 2) |
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a list of edges, |
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>>> keys = G.add_edges_from([(1, 2), (1, 3)]) |
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or a collection of edges, |
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>>> keys = G.add_edges_from(H.edges) |
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If some edges connect nodes not yet in the graph, the nodes |
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are added automatically. If an edge already exists, an additional |
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edge is created and stored using a key to identify the edge. |
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By default the key is the lowest unused integer. |
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>>> keys = G.add_edges_from([(4, 5, {"route": 28}), (4, 5, {"route": 37})]) |
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>>> G[4] |
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AdjacencyView({3: {0: {}}, 5: {0: {}, 1: {'route': 28}, 2: {'route': 37}}}) |
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**Attributes:** |
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Each graph, node, and edge can hold key/value attribute pairs |
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in an associated attribute dictionary (the keys must be hashable). |
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By default these are empty, but can be added or changed using |
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add_edge, add_node or direct manipulation of the attribute |
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dictionaries named graph, node and edge respectively. |
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>>> G = nx.MultiGraph(day="Friday") |
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>>> G.graph |
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{'day': 'Friday'} |
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Add node attributes using add_node(), add_nodes_from() or G.nodes |
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>>> G.add_node(1, time="5pm") |
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>>> G.add_nodes_from([3], time="2pm") |
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>>> G.nodes[1] |
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{'time': '5pm'} |
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>>> G.nodes[1]["room"] = 714 |
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>>> del G.nodes[1]["room"] # remove attribute |
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>>> list(G.nodes(data=True)) |
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[(1, {'time': '5pm'}), (3, {'time': '2pm'})] |
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Add edge attributes using add_edge(), add_edges_from(), subscript |
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notation, or G.edges. |
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>>> key = G.add_edge(1, 2, weight=4.7) |
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>>> keys = G.add_edges_from([(3, 4), (4, 5)], color="red") |
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>>> keys = G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})]) |
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>>> G[1][2][0]["weight"] = 4.7 |
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>>> G.edges[1, 2, 0]["weight"] = 4 |
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Warning: we protect the graph data structure by making `G.edges[1, |
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2, 0]` a read-only dict-like structure. However, you can assign to |
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attributes in e.g. `G.edges[1, 2, 0]`. Thus, use 2 sets of brackets |
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to add/change data attributes: `G.edges[1, 2, 0]['weight'] = 4`. |
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**Shortcuts:** |
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Many common graph features allow python syntax to speed reporting. |
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>>> 1 in G # check if node in graph |
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True |
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>>> [n for n in G if n < 3] # iterate through nodes |
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[1, 2] |
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>>> len(G) # number of nodes in graph |
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5 |
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>>> G[1] # adjacency dict-like view mapping neighbor -> edge key -> edge attributes |
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AdjacencyView({2: {0: {'weight': 4}, 1: {'color': 'blue'}}}) |
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Often the best way to traverse all edges of a graph is via the neighbors. |
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The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()`. |
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>>> for n, nbrsdict in G.adjacency(): |
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... for nbr, keydict in nbrsdict.items(): |
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... for key, eattr in keydict.items(): |
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... if "weight" in eattr: |
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... # Do something useful with the edges |
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... pass |
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But the edges() method is often more convenient: |
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>>> for u, v, keys, weight in G.edges(data="weight", keys=True): |
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... if weight is not None: |
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... # Do something useful with the edges |
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... pass |
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**Reporting:** |
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Simple graph information is obtained using methods and object-attributes. |
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Reporting usually provides views instead of containers to reduce memory |
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usage. The views update as the graph is updated similarly to dict-views. |
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The objects `nodes`, `edges` and `adj` provide access to data attributes |
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via lookup (e.g. `nodes[n]`, `edges[u, v, k]`, `adj[u][v]`) and iteration |
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(e.g. `nodes.items()`, `nodes.data('color')`, |
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`nodes.data('color', default='blue')` and similarly for `edges`) |
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Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`. |
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For details on these and other miscellaneous methods, see below. |
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**Subclasses (Advanced):** |
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The MultiGraph class uses a dict-of-dict-of-dict-of-dict data structure. |
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The outer dict (node_dict) holds adjacency information keyed by node. |
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The next dict (adjlist_dict) represents the adjacency information |
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and holds edge_key dicts keyed by neighbor. The edge_key dict holds |
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each edge_attr dict keyed by edge key. The inner dict |
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(edge_attr_dict) represents the edge data and holds edge attribute |
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values keyed by attribute names. |
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Each of these four dicts in the dict-of-dict-of-dict-of-dict |
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structure can be replaced by a user defined dict-like object. |
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In general, the dict-like features should be maintained but |
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extra features can be added. To replace one of the dicts create |
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a new graph class by changing the class(!) variable holding the |
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factory for that dict-like structure. The variable names are |
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node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory, |
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adjlist_outer_dict_factory, edge_key_dict_factory, edge_attr_dict_factory |
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and graph_attr_dict_factory. |
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node_dict_factory : function, (default: dict) |
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Factory function to be used to create the dict containing node |
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attributes, keyed by node id. |
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It should require no arguments and return a dict-like object |
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node_attr_dict_factory: function, (default: dict) |
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Factory function to be used to create the node attribute |
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dict which holds attribute values keyed by attribute name. |
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It should require no arguments and return a dict-like object |
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adjlist_outer_dict_factory : function, (default: dict) |
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Factory function to be used to create the outer-most dict |
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in the data structure that holds adjacency info keyed by node. |
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It should require no arguments and return a dict-like object. |
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adjlist_inner_dict_factory : function, (default: dict) |
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Factory function to be used to create the adjacency list |
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dict which holds multiedge key dicts keyed by neighbor. |
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It should require no arguments and return a dict-like object. |
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edge_key_dict_factory : function, (default: dict) |
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Factory function to be used to create the edge key dict |
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which holds edge data keyed by edge key. |
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It should require no arguments and return a dict-like object. |
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edge_attr_dict_factory : function, (default: dict) |
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Factory function to be used to create the edge attribute |
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dict which holds attribute values keyed by attribute name. |
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It should require no arguments and return a dict-like object. |
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graph_attr_dict_factory : function, (default: dict) |
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Factory function to be used to create the graph attribute |
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dict which holds attribute values keyed by attribute name. |
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It should require no arguments and return a dict-like object. |
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Typically, if your extension doesn't impact the data structure all |
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methods will inherited without issue except: `to_directed/to_undirected`. |
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By default these methods create a DiGraph/Graph class and you probably |
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want them to create your extension of a DiGraph/Graph. To facilitate |
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this we define two class variables that you can set in your subclass. |
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to_directed_class : callable, (default: DiGraph or MultiDiGraph) |
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Class to create a new graph structure in the `to_directed` method. |
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If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used. |
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to_undirected_class : callable, (default: Graph or MultiGraph) |
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Class to create a new graph structure in the `to_undirected` method. |
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If `None`, a NetworkX class (Graph or MultiGraph) is used. |
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**Subclassing Example** |
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Create a low memory graph class that effectively disallows edge |
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attributes by using a single attribute dict for all edges. |
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This reduces the memory used, but you lose edge attributes. |
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>>> class ThinGraph(nx.Graph): |
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... all_edge_dict = {"weight": 1} |
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... |
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... def single_edge_dict(self): |
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... return self.all_edge_dict |
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... |
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... edge_attr_dict_factory = single_edge_dict |
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>>> G = ThinGraph() |
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>>> G.add_edge(2, 1) |
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>>> G[2][1] |
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{'weight': 1} |
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>>> G.add_edge(2, 2) |
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>>> G[2][1] is G[2][2] |
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True |
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""" |
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edge_key_dict_factory = dict |
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def to_directed_class(self): |
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"""Returns the class to use for empty directed copies. |
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If you subclass the base classes, use this to designate |
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what directed class to use for `to_directed()` copies. |
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""" |
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return nx.MultiDiGraph |
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def to_undirected_class(self): |
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"""Returns the class to use for empty undirected copies. |
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If you subclass the base classes, use this to designate |
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what directed class to use for `to_directed()` copies. |
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""" |
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return MultiGraph |
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def __init__(self, incoming_graph_data=None, multigraph_input=None, **attr): |
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"""Initialize a graph with edges, name, or graph attributes. |
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Parameters |
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---------- |
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incoming_graph_data : input graph |
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Data to initialize graph. If incoming_graph_data=None (default) |
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an empty graph is created. The data can be an edge list, or any |
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NetworkX graph object. If the corresponding optional Python |
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packages are installed the data can also be a 2D NumPy array, a |
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SciPy sparse array, or a PyGraphviz graph. |
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multigraph_input : bool or None (default None) |
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Note: Only used when `incoming_graph_data` is a dict. |
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If True, `incoming_graph_data` is assumed to be a |
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dict-of-dict-of-dict-of-dict structure keyed by |
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node to neighbor to edge keys to edge data for multi-edges. |
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A NetworkXError is raised if this is not the case. |
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If False, :func:`to_networkx_graph` is used to try to determine |
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the dict's graph data structure as either a dict-of-dict-of-dict |
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keyed by node to neighbor to edge data, or a dict-of-iterable |
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keyed by node to neighbors. |
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If None, the treatment for True is tried, but if it fails, |
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the treatment for False is tried. |
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attr : keyword arguments, optional (default= no attributes) |
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Attributes to add to graph as key=value pairs. |
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See Also |
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-------- |
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convert |
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Examples |
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-------- |
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>>> G = nx.MultiGraph() |
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>>> G = nx.MultiGraph(name="my graph") |
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>>> e = [(1, 2), (1, 2), (2, 3), (3, 4)] # list of edges |
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>>> G = nx.MultiGraph(e) |
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Arbitrary graph attribute pairs (key=value) may be assigned |
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>>> G = nx.MultiGraph(e, day="Friday") |
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>>> G.graph |
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{'day': 'Friday'} |
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""" |
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if isinstance(incoming_graph_data, dict) and multigraph_input is not False: |
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Graph.__init__(self) |
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try: |
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convert.from_dict_of_dicts( |
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incoming_graph_data, create_using=self, multigraph_input=True |
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) |
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self.graph.update(attr) |
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except Exception as err: |
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if multigraph_input is True: |
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raise nx.NetworkXError( |
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f"converting multigraph_input raised:\n{type(err)}: {err}" |
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) |
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Graph.__init__(self, incoming_graph_data, **attr) |
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else: |
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Graph.__init__(self, incoming_graph_data, **attr) |
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@cached_property |
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def adj(self): |
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"""Graph adjacency object holding the neighbors of each node. |
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This object is a read-only dict-like structure with node keys |
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and neighbor-dict values. The neighbor-dict is keyed by neighbor |
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to the edgekey-data-dict. So `G.adj[3][2][0]['color'] = 'blue'` sets |
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the color of the edge `(3, 2, 0)` to `"blue"`. |
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Iterating over G.adj behaves like a dict. Useful idioms include |
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`for nbr, edgesdict in G.adj[n].items():`. |
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The neighbor information is also provided by subscripting the graph. |
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Examples |
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-------- |
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>>> e = [(1, 2), (1, 2), (1, 3), (3, 4)] # list of edges |
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>>> G = nx.MultiGraph(e) |
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>>> G.edges[1, 2, 0]["weight"] = 3 |
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>>> result = set() |
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>>> for edgekey, data in G[1][2].items(): |
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... result.add(data.get("weight", 1)) |
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>>> result |
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{1, 3} |
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For directed graphs, `G.adj` holds outgoing (successor) info. |
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""" |
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return MultiAdjacencyView(self._adj) |
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def new_edge_key(self, u, v): |
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"""Returns an unused key for edges between nodes `u` and `v`. |
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The nodes `u` and `v` do not need to be already in the graph. |
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Notes |
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----- |
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In the standard MultiGraph class the new key is the number of existing |
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edges between `u` and `v` (increased if necessary to ensure unused). |
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The first edge will have key 0, then 1, etc. If an edge is removed |
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further new_edge_keys may not be in this order. |
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Parameters |
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---------- |
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u, v : nodes |
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Returns |
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------- |
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key : int |
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""" |
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try: |
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keydict = self._adj[u][v] |
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except KeyError: |
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return 0 |
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key = len(keydict) |
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while key in keydict: |
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key += 1 |
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return key |
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def add_edge(self, u_for_edge, v_for_edge, key=None, **attr): |
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"""Add an edge between u and v. |
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The nodes u and v will be automatically added if they are |
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not already in the graph. |
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Edge attributes can be specified with keywords or by directly |
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accessing the edge's attribute dictionary. See examples below. |
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Parameters |
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---------- |
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u_for_edge, v_for_edge : nodes |
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Nodes can be, for example, strings or numbers. |
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Nodes must be hashable (and not None) Python objects. |
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key : hashable identifier, optional (default=lowest unused integer) |
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Used to distinguish multiedges between a pair of nodes. |
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attr : keyword arguments, optional |
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Edge data (or labels or objects) can be assigned using |
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keyword arguments. |
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Returns |
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------- |
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The edge key assigned to the edge. |
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See Also |
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-------- |
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add_edges_from : add a collection of edges |
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Notes |
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----- |
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To replace/update edge data, use the optional key argument |
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to identify a unique edge. Otherwise a new edge will be created. |
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NetworkX algorithms designed for weighted graphs cannot use |
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multigraphs directly because it is not clear how to handle |
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multiedge weights. Convert to Graph using edge attribute |
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'weight' to enable weighted graph algorithms. |
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Default keys are generated using the method `new_edge_key()`. |
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This method can be overridden by subclassing the base class and |
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providing a custom `new_edge_key()` method. |
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Examples |
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-------- |
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The following each add an additional edge e=(1, 2) to graph G: |
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>>> G = nx.MultiGraph() |
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>>> e = (1, 2) |
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>>> ekey = G.add_edge(1, 2) # explicit two-node form |
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>>> G.add_edge(*e) # single edge as tuple of two nodes |
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1 |
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>>> G.add_edges_from([(1, 2)]) # add edges from iterable container |
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[2] |
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Associate data to edges using keywords: |
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>>> ekey = G.add_edge(1, 2, weight=3) |
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>>> ekey = G.add_edge(1, 2, key=0, weight=4) # update data for key=0 |
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>>> ekey = G.add_edge(1, 3, weight=7, capacity=15, length=342.7) |
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For non-string attribute keys, use subscript notation. |
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>>> ekey = G.add_edge(1, 2) |
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>>> G[1][2][0].update({0: 5}) |
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>>> G.edges[1, 2, 0].update({0: 5}) |
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""" |
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u, v = u_for_edge, v_for_edge |
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if u not in self._adj: |
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if u is None: |
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raise ValueError("None cannot be a node") |
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self._adj[u] = self.adjlist_inner_dict_factory() |
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self._node[u] = self.node_attr_dict_factory() |
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if v not in self._adj: |
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if v is None: |
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raise ValueError("None cannot be a node") |
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self._adj[v] = self.adjlist_inner_dict_factory() |
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self._node[v] = self.node_attr_dict_factory() |
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if key is None: |
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key = self.new_edge_key(u, v) |
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if v in self._adj[u]: |
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keydict = self._adj[u][v] |
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datadict = keydict.get(key, self.edge_attr_dict_factory()) |
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datadict.update(attr) |
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keydict[key] = datadict |
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else: |
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datadict = self.edge_attr_dict_factory() |
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datadict.update(attr) |
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keydict = self.edge_key_dict_factory() |
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keydict[key] = datadict |
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self._adj[u][v] = keydict |
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self._adj[v][u] = keydict |
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nx._clear_cache(self) |
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return key |
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def add_edges_from(self, ebunch_to_add, **attr): |
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"""Add all the edges in ebunch_to_add. |
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|
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Parameters |
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---------- |
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ebunch_to_add : container of edges |
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Each edge given in the container will be added to the |
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graph. The edges can be: |
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|
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- 2-tuples (u, v) or |
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- 3-tuples (u, v, d) for an edge data dict d, or |
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- 3-tuples (u, v, k) for not iterable key k, or |
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- 4-tuples (u, v, k, d) for an edge with data and key k |
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|
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attr : keyword arguments, optional |
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Edge data (or labels or objects) can be assigned using |
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keyword arguments. |
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|
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Returns |
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------- |
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A list of edge keys assigned to the edges in `ebunch`. |
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See Also |
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-------- |
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add_edge : add a single edge |
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add_weighted_edges_from : convenient way to add weighted edges |
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|
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Notes |
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----- |
|
Adding the same edge twice has no effect but any edge data |
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will be updated when each duplicate edge is added. |
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|
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Edge attributes specified in an ebunch take precedence over |
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attributes specified via keyword arguments. |
|
|
|
Default keys are generated using the method ``new_edge_key()``. |
|
This method can be overridden by subclassing the base class and |
|
providing a custom ``new_edge_key()`` method. |
|
|
|
When adding edges from an iterator over the graph you are changing, |
|
a `RuntimeError` can be raised with message: |
|
`RuntimeError: dictionary changed size during iteration`. This |
|
happens when the graph's underlying dictionary is modified during |
|
iteration. To avoid this error, evaluate the iterator into a separate |
|
object, e.g. by using `list(iterator_of_edges)`, and pass this |
|
object to `G.add_edges_from`. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
|
>>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples |
|
>>> e = zip(range(0, 3), range(1, 4)) |
|
>>> G.add_edges_from(e) # Add the path graph 0-1-2-3 |
|
|
|
Associate data to edges |
|
|
|
>>> G.add_edges_from([(1, 2), (2, 3)], weight=3) |
|
>>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898") |
|
|
|
Evaluate an iterator over a graph if using it to modify the same graph |
|
|
|
>>> G = nx.MultiGraph([(1, 2), (2, 3), (3, 4)]) |
|
>>> # Grow graph by one new node, adding edges to all existing nodes. |
|
>>> # wrong way - will raise RuntimeError |
|
>>> # G.add_edges_from(((5, n) for n in G.nodes)) |
|
>>> # right way - note that there will be no self-edge for node 5 |
|
>>> assigned_keys = G.add_edges_from(list((5, n) for n in G.nodes)) |
|
""" |
|
keylist = [] |
|
for e in ebunch_to_add: |
|
ne = len(e) |
|
if ne == 4: |
|
u, v, key, dd = e |
|
elif ne == 3: |
|
u, v, dd = e |
|
key = None |
|
elif ne == 2: |
|
u, v = e |
|
dd = {} |
|
key = None |
|
else: |
|
msg = f"Edge tuple {e} must be a 2-tuple, 3-tuple or 4-tuple." |
|
raise NetworkXError(msg) |
|
ddd = {} |
|
ddd.update(attr) |
|
try: |
|
ddd.update(dd) |
|
except (TypeError, ValueError): |
|
if ne != 3: |
|
raise |
|
key = dd |
|
key = self.add_edge(u, v, key) |
|
self[u][v][key].update(ddd) |
|
keylist.append(key) |
|
nx._clear_cache(self) |
|
return keylist |
|
|
|
def remove_edge(self, u, v, key=None): |
|
"""Remove an edge between u and v. |
|
|
|
Parameters |
|
---------- |
|
u, v : nodes |
|
Remove an edge between nodes u and v. |
|
key : hashable identifier, optional (default=None) |
|
Used to distinguish multiple edges between a pair of nodes. |
|
If None, remove a single edge between u and v. If there are |
|
multiple edges, removes the last edge added in terms of |
|
insertion order. |
|
|
|
Raises |
|
------ |
|
NetworkXError |
|
If there is not an edge between u and v, or |
|
if there is no edge with the specified key. |
|
|
|
See Also |
|
-------- |
|
remove_edges_from : remove a collection of edges |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.MultiGraph() |
|
>>> nx.add_path(G, [0, 1, 2, 3]) |
|
>>> G.remove_edge(0, 1) |
|
>>> e = (1, 2) |
|
>>> G.remove_edge(*e) # unpacks e from an edge tuple |
|
|
|
For multiple edges |
|
|
|
>>> G = nx.MultiGraph() # or MultiDiGraph, etc |
|
>>> G.add_edges_from([(1, 2), (1, 2), (1, 2)]) # key_list returned |
|
[0, 1, 2] |
|
|
|
When ``key=None`` (the default), edges are removed in the opposite |
|
order that they were added: |
|
|
|
>>> G.remove_edge(1, 2) |
|
>>> G.edges(keys=True) |
|
MultiEdgeView([(1, 2, 0), (1, 2, 1)]) |
|
>>> G.remove_edge(2, 1) # edges are not directed |
|
>>> G.edges(keys=True) |
|
MultiEdgeView([(1, 2, 0)]) |
|
|
|
For edges with keys |
|
|
|
>>> G = nx.MultiGraph() |
|
>>> G.add_edge(1, 2, key="first") |
|
'first' |
|
>>> G.add_edge(1, 2, key="second") |
|
'second' |
|
>>> G.remove_edge(1, 2, key="first") |
|
>>> G.edges(keys=True) |
|
MultiEdgeView([(1, 2, 'second')]) |
|
|
|
""" |
|
try: |
|
d = self._adj[u][v] |
|
except KeyError as err: |
|
raise NetworkXError(f"The edge {u}-{v} is not in the graph.") from err |
|
|
|
if key is None: |
|
d.popitem() |
|
else: |
|
try: |
|
del d[key] |
|
except KeyError as err: |
|
msg = f"The edge {u}-{v} with key {key} is not in the graph." |
|
raise NetworkXError(msg) from err |
|
if len(d) == 0: |
|
|
|
del self._adj[u][v] |
|
if u != v: |
|
del self._adj[v][u] |
|
nx._clear_cache(self) |
|
|
|
def remove_edges_from(self, ebunch): |
|
"""Remove all edges specified in ebunch. |
|
|
|
Parameters |
|
---------- |
|
ebunch: list or container of edge tuples |
|
Each edge given in the list or container will be removed |
|
from the graph. The edges can be: |
|
|
|
- 2-tuples (u, v) A single edge between u and v is removed. |
|
- 3-tuples (u, v, key) The edge identified by key is removed. |
|
- 4-tuples (u, v, key, data) where data is ignored. |
|
|
|
See Also |
|
-------- |
|
remove_edge : remove a single edge |
|
|
|
Notes |
|
----- |
|
Will fail silently if an edge in ebunch is not in the graph. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc |
|
>>> ebunch = [(1, 2), (2, 3)] |
|
>>> G.remove_edges_from(ebunch) |
|
|
|
Removing multiple copies of edges |
|
|
|
>>> G = nx.MultiGraph() |
|
>>> keys = G.add_edges_from([(1, 2), (1, 2), (1, 2)]) |
|
>>> G.remove_edges_from([(1, 2), (2, 1)]) # edges aren't directed |
|
>>> list(G.edges()) |
|
[(1, 2)] |
|
>>> G.remove_edges_from([(1, 2), (1, 2)]) # silently ignore extra copy |
|
>>> list(G.edges) # now empty graph |
|
[] |
|
|
|
When the edge is a 2-tuple ``(u, v)`` but there are multiple edges between |
|
u and v in the graph, the most recent edge (in terms of insertion |
|
order) is removed. |
|
|
|
>>> G = nx.MultiGraph() |
|
>>> for key in ("x", "y", "a"): |
|
... k = G.add_edge(0, 1, key=key) |
|
>>> G.edges(keys=True) |
|
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y'), (0, 1, 'a')]) |
|
>>> G.remove_edges_from([(0, 1)]) |
|
>>> G.edges(keys=True) |
|
MultiEdgeView([(0, 1, 'x'), (0, 1, 'y')]) |
|
|
|
""" |
|
for e in ebunch: |
|
try: |
|
self.remove_edge(*e[:3]) |
|
except NetworkXError: |
|
pass |
|
nx._clear_cache(self) |
|
|
|
def has_edge(self, u, v, key=None): |
|
"""Returns True if the graph has an edge between nodes u and v. |
|
|
|
This is the same as `v in G[u] or key in G[u][v]` |
|
without KeyError exceptions. |
|
|
|
Parameters |
|
---------- |
|
u, v : nodes |
|
Nodes can be, for example, strings or numbers. |
|
|
|
key : hashable identifier, optional (default=None) |
|
If specified return True only if the edge with |
|
key is found. |
|
|
|
Returns |
|
------- |
|
edge_ind : bool |
|
True if edge is in the graph, False otherwise. |
|
|
|
Examples |
|
-------- |
|
Can be called either using two nodes u, v, an edge tuple (u, v), |
|
or an edge tuple (u, v, key). |
|
|
|
>>> G = nx.MultiGraph() # or MultiDiGraph |
|
>>> nx.add_path(G, [0, 1, 2, 3]) |
|
>>> G.has_edge(0, 1) # using two nodes |
|
True |
|
>>> e = (0, 1) |
|
>>> G.has_edge(*e) # e is a 2-tuple (u, v) |
|
True |
|
>>> G.add_edge(0, 1, key="a") |
|
'a' |
|
>>> G.has_edge(0, 1, key="a") # specify key |
|
True |
|
>>> G.has_edge(1, 0, key="a") # edges aren't directed |
|
True |
|
>>> e = (0, 1, "a") |
|
>>> G.has_edge(*e) # e is a 3-tuple (u, v, 'a') |
|
True |
|
|
|
The following syntax are equivalent: |
|
|
|
>>> G.has_edge(0, 1) |
|
True |
|
>>> 1 in G[0] # though this gives :exc:`KeyError` if 0 not in G |
|
True |
|
>>> 0 in G[1] # other order; also gives :exc:`KeyError` if 0 not in G |
|
True |
|
|
|
""" |
|
try: |
|
if key is None: |
|
return v in self._adj[u] |
|
else: |
|
return key in self._adj[u][v] |
|
except KeyError: |
|
return False |
|
|
|
@cached_property |
|
def edges(self): |
|
"""Returns an iterator over the edges. |
|
|
|
edges(self, nbunch=None, data=False, keys=False, default=None) |
|
|
|
The MultiEdgeView provides set-like operations on the edge-tuples |
|
as well as edge attribute lookup. When called, it also provides |
|
an EdgeDataView object which allows control of access to edge |
|
attributes (but does not provide set-like operations). |
|
Hence, ``G.edges[u, v, k]['color']`` provides the value of the color |
|
attribute for the edge from ``u`` to ``v`` with key ``k`` while |
|
``for (u, v, k, c) in G.edges(data='color', keys=True, default="red"):`` |
|
iterates through all the edges yielding the color attribute with |
|
default `'red'` if no color attribute exists. |
|
|
|
Edges are returned as tuples with optional data and keys |
|
in the order (node, neighbor, key, data). If ``keys=True`` is not |
|
provided, the tuples will just be (node, neighbor, data), but |
|
multiple tuples with the same node and neighbor will be generated |
|
when multiple edges exist between two nodes. |
|
|
|
Parameters |
|
---------- |
|
nbunch : single node, container, or all nodes (default= all nodes) |
|
The view will only report edges from these nodes. |
|
data : string or bool, optional (default=False) |
|
The edge attribute returned in 3-tuple (u, v, ddict[data]). |
|
If True, return edge attribute dict in 3-tuple (u, v, ddict). |
|
If False, return 2-tuple (u, v). |
|
keys : bool, optional (default=False) |
|
If True, return edge keys with each edge, creating (u, v, k) |
|
tuples or (u, v, k, d) tuples if data is also requested. |
|
default : value, optional (default=None) |
|
Value used for edges that don't have the requested attribute. |
|
Only relevant if data is not True or False. |
|
|
|
Returns |
|
------- |
|
edges : MultiEdgeView |
|
A view of edge attributes, usually it iterates over (u, v) |
|
(u, v, k) or (u, v, k, d) tuples of edges, but can also be |
|
used for attribute lookup as ``edges[u, v, k]['foo']``. |
|
|
|
Notes |
|
----- |
|
Nodes in nbunch that are not in the graph will be (quietly) ignored. |
|
For directed graphs this returns the out-edges. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.MultiGraph() |
|
>>> nx.add_path(G, [0, 1, 2]) |
|
>>> key = G.add_edge(2, 3, weight=5) |
|
>>> key2 = G.add_edge(2, 1, weight=2) # multi-edge |
|
>>> [e for e in G.edges()] |
|
[(0, 1), (1, 2), (1, 2), (2, 3)] |
|
>>> G.edges.data() # default data is {} (empty dict) |
|
MultiEdgeDataView([(0, 1, {}), (1, 2, {}), (1, 2, {'weight': 2}), (2, 3, {'weight': 5})]) |
|
>>> G.edges.data("weight", default=1) |
|
MultiEdgeDataView([(0, 1, 1), (1, 2, 1), (1, 2, 2), (2, 3, 5)]) |
|
>>> G.edges(keys=True) # default keys are integers |
|
MultiEdgeView([(0, 1, 0), (1, 2, 0), (1, 2, 1), (2, 3, 0)]) |
|
>>> G.edges.data(keys=True) |
|
MultiEdgeDataView([(0, 1, 0, {}), (1, 2, 0, {}), (1, 2, 1, {'weight': 2}), (2, 3, 0, {'weight': 5})]) |
|
>>> G.edges.data("weight", default=1, keys=True) |
|
MultiEdgeDataView([(0, 1, 0, 1), (1, 2, 0, 1), (1, 2, 1, 2), (2, 3, 0, 5)]) |
|
>>> G.edges([0, 3]) # Note ordering of tuples from listed sources |
|
MultiEdgeDataView([(0, 1), (3, 2)]) |
|
>>> G.edges([0, 3, 2, 1]) # Note ordering of tuples |
|
MultiEdgeDataView([(0, 1), (3, 2), (2, 1), (2, 1)]) |
|
>>> G.edges(0) |
|
MultiEdgeDataView([(0, 1)]) |
|
""" |
|
return MultiEdgeView(self) |
|
|
|
def get_edge_data(self, u, v, key=None, default=None): |
|
"""Returns the attribute dictionary associated with edge (u, v, |
|
key). |
|
|
|
If a key is not provided, returns a dictionary mapping edge keys |
|
to attribute dictionaries for each edge between u and v. |
|
|
|
This is identical to `G[u][v][key]` except the default is returned |
|
instead of an exception is the edge doesn't exist. |
|
|
|
Parameters |
|
---------- |
|
u, v : nodes |
|
|
|
default : any Python object (default=None) |
|
Value to return if the specific edge (u, v, key) is not |
|
found, OR if there are no edges between u and v and no key |
|
is specified. |
|
|
|
key : hashable identifier, optional (default=None) |
|
Return data only for the edge with specified key, as an |
|
attribute dictionary (rather than a dictionary mapping keys |
|
to attribute dictionaries). |
|
|
|
Returns |
|
------- |
|
edge_dict : dictionary |
|
The edge attribute dictionary, OR a dictionary mapping edge |
|
keys to attribute dictionaries for each of those edges if no |
|
specific key is provided (even if there's only one edge |
|
between u and v). |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.MultiGraph() # or MultiDiGraph |
|
>>> key = G.add_edge(0, 1, key="a", weight=7) |
|
>>> G[0][1]["a"] # key='a' |
|
{'weight': 7} |
|
>>> G.edges[0, 1, "a"] # key='a' |
|
{'weight': 7} |
|
|
|
Warning: we protect the graph data structure by making |
|
`G.edges` and `G[1][2]` read-only dict-like structures. |
|
However, you can assign values to attributes in e.g. |
|
`G.edges[1, 2, 'a']` or `G[1][2]['a']` using an additional |
|
bracket as shown next. You need to specify all edge info |
|
to assign to the edge data associated with an edge. |
|
|
|
>>> G[0][1]["a"]["weight"] = 10 |
|
>>> G.edges[0, 1, "a"]["weight"] = 10 |
|
>>> G[0][1]["a"]["weight"] |
|
10 |
|
>>> G.edges[1, 0, "a"]["weight"] |
|
10 |
|
|
|
>>> G = nx.MultiGraph() # or MultiDiGraph |
|
>>> nx.add_path(G, [0, 1, 2, 3]) |
|
>>> G.edges[0, 1, 0]["weight"] = 5 |
|
>>> G.get_edge_data(0, 1) |
|
{0: {'weight': 5}} |
|
>>> e = (0, 1) |
|
>>> G.get_edge_data(*e) # tuple form |
|
{0: {'weight': 5}} |
|
>>> G.get_edge_data(3, 0) # edge not in graph, returns None |
|
>>> G.get_edge_data(3, 0, default=0) # edge not in graph, return default |
|
0 |
|
>>> G.get_edge_data(1, 0, 0) # specific key gives back |
|
{'weight': 5} |
|
""" |
|
try: |
|
if key is None: |
|
return self._adj[u][v] |
|
else: |
|
return self._adj[u][v][key] |
|
except KeyError: |
|
return default |
|
|
|
@cached_property |
|
def degree(self): |
|
"""A DegreeView for the Graph as G.degree or G.degree(). |
|
|
|
The node degree is the number of edges adjacent to the node. |
|
The weighted node degree is the sum of the edge weights for |
|
edges incident to that node. |
|
|
|
This object provides an iterator for (node, degree) as well as |
|
lookup for the degree for a single node. |
|
|
|
Parameters |
|
---------- |
|
nbunch : single node, container, or all nodes (default= all nodes) |
|
The view will only report edges incident to these nodes. |
|
|
|
weight : string or None, optional (default=None) |
|
The name of an edge attribute that holds the numerical value used |
|
as a weight. If None, then each edge has weight 1. |
|
The degree is the sum of the edge weights adjacent to the node. |
|
|
|
Returns |
|
------- |
|
MultiDegreeView or int |
|
If multiple nodes are requested (the default), returns a `MultiDegreeView` |
|
mapping nodes to their degree. |
|
If a single node is requested, returns the degree of the node as an integer. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
|
>>> nx.add_path(G, [0, 1, 2, 3]) |
|
>>> G.degree(0) # node 0 with degree 1 |
|
1 |
|
>>> list(G.degree([0, 1])) |
|
[(0, 1), (1, 2)] |
|
|
|
""" |
|
return MultiDegreeView(self) |
|
|
|
def is_multigraph(self): |
|
"""Returns True if graph is a multigraph, False otherwise.""" |
|
return True |
|
|
|
def is_directed(self): |
|
"""Returns True if graph is directed, False otherwise.""" |
|
return False |
|
|
|
def copy(self, as_view=False): |
|
"""Returns a copy of the graph. |
|
|
|
The copy method by default returns an independent shallow copy |
|
of the graph and attributes. That is, if an attribute is a |
|
container, that container is shared by the original an the copy. |
|
Use Python's `copy.deepcopy` for new containers. |
|
|
|
If `as_view` is True then a view is returned instead of a copy. |
|
|
|
Notes |
|
----- |
|
All copies reproduce the graph structure, but data attributes |
|
may be handled in different ways. There are four types of copies |
|
of a graph that people might want. |
|
|
|
Deepcopy -- A "deepcopy" copies the graph structure as well as |
|
all data attributes and any objects they might contain. |
|
The entire graph object is new so that changes in the copy |
|
do not affect the original object. (see Python's copy.deepcopy) |
|
|
|
Data Reference (Shallow) -- For a shallow copy the graph structure |
|
is copied but the edge, node and graph attribute dicts are |
|
references to those in the original graph. This saves |
|
time and memory but could cause confusion if you change an attribute |
|
in one graph and it changes the attribute in the other. |
|
NetworkX does not provide this level of shallow copy. |
|
|
|
Independent Shallow -- This copy creates new independent attribute |
|
dicts and then does a shallow copy of the attributes. That is, any |
|
attributes that are containers are shared between the new graph |
|
and the original. This is exactly what `dict.copy()` provides. |
|
You can obtain this style copy using: |
|
|
|
>>> G = nx.path_graph(5) |
|
>>> H = G.copy() |
|
>>> H = G.copy(as_view=False) |
|
>>> H = nx.Graph(G) |
|
>>> H = G.__class__(G) |
|
|
|
Fresh Data -- For fresh data, the graph structure is copied while |
|
new empty data attribute dicts are created. The resulting graph |
|
is independent of the original and it has no edge, node or graph |
|
attributes. Fresh copies are not enabled. Instead use: |
|
|
|
>>> H = G.__class__() |
|
>>> H.add_nodes_from(G) |
|
>>> H.add_edges_from(G.edges) |
|
|
|
View -- Inspired by dict-views, graph-views act like read-only |
|
versions of the original graph, providing a copy of the original |
|
structure without requiring any memory for copying the information. |
|
|
|
See the Python copy module for more information on shallow |
|
and deep copies, https://docs.python.org/3/library/copy.html. |
|
|
|
Parameters |
|
---------- |
|
as_view : bool, optional (default=False) |
|
If True, the returned graph-view provides a read-only view |
|
of the original graph without actually copying any data. |
|
|
|
Returns |
|
------- |
|
G : Graph |
|
A copy of the graph. |
|
|
|
See Also |
|
-------- |
|
to_directed: return a directed copy of the graph. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc |
|
>>> H = G.copy() |
|
|
|
""" |
|
if as_view is True: |
|
return nx.graphviews.generic_graph_view(self) |
|
G = self.__class__() |
|
G.graph.update(self.graph) |
|
G.add_nodes_from((n, d.copy()) for n, d in self._node.items()) |
|
G.add_edges_from( |
|
(u, v, key, datadict.copy()) |
|
for u, nbrs in self._adj.items() |
|
for v, keydict in nbrs.items() |
|
for key, datadict in keydict.items() |
|
) |
|
return G |
|
|
|
def to_directed(self, as_view=False): |
|
"""Returns a directed representation of the graph. |
|
|
|
Returns |
|
------- |
|
G : MultiDiGraph |
|
A directed graph with the same name, same nodes, and with |
|
each edge (u, v, k, data) replaced by two directed edges |
|
(u, v, k, data) and (v, u, k, data). |
|
|
|
Notes |
|
----- |
|
This returns a "deepcopy" of the edge, node, and |
|
graph attributes which attempts to completely copy |
|
all of the data and references. |
|
|
|
This is in contrast to the similar D=MultiDiGraph(G) which |
|
returns a shallow copy of the data. |
|
|
|
See the Python copy module for more information on shallow |
|
and deep copies, https://docs.python.org/3/library/copy.html. |
|
|
|
Warning: If you have subclassed MultiGraph to use dict-like objects |
|
in the data structure, those changes do not transfer to the |
|
MultiDiGraph created by this method. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.MultiGraph() |
|
>>> G.add_edge(0, 1) |
|
0 |
|
>>> G.add_edge(0, 1) |
|
1 |
|
>>> H = G.to_directed() |
|
>>> list(H.edges) |
|
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1)] |
|
|
|
If already directed, return a (deep) copy |
|
|
|
>>> G = nx.MultiDiGraph() |
|
>>> G.add_edge(0, 1) |
|
0 |
|
>>> H = G.to_directed() |
|
>>> list(H.edges) |
|
[(0, 1, 0)] |
|
""" |
|
graph_class = self.to_directed_class() |
|
if as_view is True: |
|
return nx.graphviews.generic_graph_view(self, graph_class) |
|
|
|
G = graph_class() |
|
G.graph.update(deepcopy(self.graph)) |
|
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items()) |
|
G.add_edges_from( |
|
(u, v, key, deepcopy(datadict)) |
|
for u, nbrs in self.adj.items() |
|
for v, keydict in nbrs.items() |
|
for key, datadict in keydict.items() |
|
) |
|
return G |
|
|
|
def to_undirected(self, as_view=False): |
|
"""Returns an undirected copy of the graph. |
|
|
|
Returns |
|
------- |
|
G : Graph/MultiGraph |
|
A deepcopy of the graph. |
|
|
|
See Also |
|
-------- |
|
copy, add_edge, add_edges_from |
|
|
|
Notes |
|
----- |
|
This returns a "deepcopy" of the edge, node, and |
|
graph attributes which attempts to completely copy |
|
all of the data and references. |
|
|
|
This is in contrast to the similar `G = nx.MultiGraph(D)` |
|
which returns a shallow copy of the data. |
|
|
|
See the Python copy module for more information on shallow |
|
and deep copies, https://docs.python.org/3/library/copy.html. |
|
|
|
Warning: If you have subclassed MultiGraph to use dict-like |
|
objects in the data structure, those changes do not transfer |
|
to the MultiGraph created by this method. |
|
|
|
Examples |
|
-------- |
|
>>> G = nx.MultiGraph([(0, 1), (0, 1), (1, 2)]) |
|
>>> H = G.to_directed() |
|
>>> list(H.edges) |
|
[(0, 1, 0), (0, 1, 1), (1, 0, 0), (1, 0, 1), (1, 2, 0), (2, 1, 0)] |
|
>>> G2 = H.to_undirected() |
|
>>> list(G2.edges) |
|
[(0, 1, 0), (0, 1, 1), (1, 2, 0)] |
|
""" |
|
graph_class = self.to_undirected_class() |
|
if as_view is True: |
|
return nx.graphviews.generic_graph_view(self, graph_class) |
|
|
|
G = graph_class() |
|
G.graph.update(deepcopy(self.graph)) |
|
G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items()) |
|
G.add_edges_from( |
|
(u, v, key, deepcopy(datadict)) |
|
for u, nbrs in self._adj.items() |
|
for v, keydict in nbrs.items() |
|
for key, datadict in keydict.items() |
|
) |
|
return G |
|
|
|
def number_of_edges(self, u=None, v=None): |
|
"""Returns the number of edges between two nodes. |
|
|
|
Parameters |
|
---------- |
|
u, v : nodes, optional (Default=all edges) |
|
If u and v are specified, return the number of edges between |
|
u and v. Otherwise return the total number of all edges. |
|
|
|
Returns |
|
------- |
|
nedges : int |
|
The number of edges in the graph. If nodes `u` and `v` are |
|
specified return the number of edges between those nodes. If |
|
the graph is directed, this only returns the number of edges |
|
from `u` to `v`. |
|
|
|
See Also |
|
-------- |
|
size |
|
|
|
Examples |
|
-------- |
|
For undirected multigraphs, this method counts the total number |
|
of edges in the graph:: |
|
|
|
>>> G = nx.MultiGraph() |
|
>>> G.add_edges_from([(0, 1), (0, 1), (1, 2)]) |
|
[0, 1, 0] |
|
>>> G.number_of_edges() |
|
3 |
|
|
|
If you specify two nodes, this counts the total number of edges |
|
joining the two nodes:: |
|
|
|
>>> G.number_of_edges(0, 1) |
|
2 |
|
|
|
For directed multigraphs, this method can count the total number |
|
of directed edges from `u` to `v`:: |
|
|
|
>>> G = nx.MultiDiGraph() |
|
>>> G.add_edges_from([(0, 1), (0, 1), (1, 0)]) |
|
[0, 1, 0] |
|
>>> G.number_of_edges(0, 1) |
|
2 |
|
>>> G.number_of_edges(1, 0) |
|
1 |
|
|
|
""" |
|
if u is None: |
|
return self.size() |
|
try: |
|
edgedata = self._adj[u][v] |
|
except KeyError: |
|
return 0 |
|
return len(edgedata) |
|
|