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| medicationCategories | |
| ==================== | |
| %-------------------------------- | |
| Written by Marzyeh Ghassemi, CSAIL, MIT | |
| Sept 21, 2012 | |
| Updated 13 Nov, 2017 | |
| Please contact the author with errors found. | |
| mghassem {AT} mit {DOT} edu | |
| %-------------------------------- | |
| Quick script to parse out medications from discharge summaries in MIMIC format. Note that this approach is brute force: it uses minimal NLP, and can be vastly improved. (hint, hint) | |
| If you use this code, please cite the GitHub project (see below for Bibtex): | |
| @misc{Ghassemi2012, | |
| author = {Ghassemi, Marzyeh}, | |
| title = {Discharge Summary Based Pre-Admission (Home) Medication Parser}, | |
| year = {2012}, | |
| publisher = {GitHub}, | |
| journal = {GitHub repository}, | |
| howpublished = {\url{https://github.com/mghassem/medicationCategories}}, | |
| commit = {PASTE THE COMMIT VERSION YOU'RE USING HERE} | |
| } | |
| The script is set up to run on the MIMIC `noteevents` table in a Postgres database. Please refer to the Jupyter Notebook (finddrugs.ipynb) for example usage. | |
| Thanks! | |
| Marzyeh | |