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de1a22c4_pt__AGER_004__ENST00000375067___Name
|
[Transcript ID] ENST00000469940 [bp] 557 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
AGER-009
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-001 [Transcript ID] ENST00000229239 [bp] 1875 [Protein] 335aa [Translation ID] ENSP00000229239 [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_002046 NP_002037 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-002 [Transcript ID] ENST00000396861 [bp] 1348 [Protein] 335aa [Translation ID] ENSP00000380070 [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289745 NP_001276674 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-008 [Transcript ID] ENST00000396858 [bp] 1292 [Protein] 293aa [Translation ID] ENSP00000380067 [CCDS] CCDS58201 [UniProt] P04406 [RefSeq] NM_001256799 NP_001243728 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-003 [Transcript ID] ENST00000396859 [bp] 1256 [Protein] 335aa [Translation ID] ENSP00000380068 [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289746 NP_001276675 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-004 [Transcript ID] ENST00000396856 [bp] 1266 [Protein] 260aa [Translation ID] ENSP00000380065 [CCDS] - [UniProt] E7EUT5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-201 [Transcript ID] ENST00000619601 [bp] 1086 [Protein] 293aa [Translation ID] ENSP00000478864 [CCDS] - [UniProt] P04406 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-007 [Transcript ID] ENST00000466525 [bp] 1720 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-005 [Transcript ID] ENST00000466588 [bp] 1363 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-006 [Transcript ID] ENST00000474249 [bp] 1333 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-011 [Transcript ID] ENST00000492719 [bp] 930 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
5ec472e7__Gene__GAPDH__ENSG00000111640___Biotype
|
[Name] GAPDH-010 [Transcript ID] ENST00000496049 [bp] 390 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-001 [Transcript ID] ENST00000244137 [bp] 1910 [Protein] 493aa [Translation ID] ENSP00000244137 [CCDS] CCDS42544 [UniProt] P12955 [RefSeq] NM_000285 NP_000276 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-002 [Transcript ID] ENST00000397032 [bp] 1754 [Protein] 452aa [Translation ID] ENSP00000380226 [CCDS] CCDS54245 [UniProt] P12955 [RefSeq] NM_001166056 NP_001159528 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-003 [Transcript ID] ENST00000436370 [bp] 1638 [Protein] 429aa [Translation ID] ENSP00000391890 [CCDS] CCDS54244 [UniProt] P12955 [RefSeq] NM_001166057 NP_001159529 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-009 [Transcript ID] ENST00000588328 [bp] 581 [Protein] 194aa [Translation ID] ENSP00000468516 [CCDS] - [UniProt] K7ES25 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-014 [Transcript ID] ENST00000609145 [bp] 570 [Protein] 104aa [Translation ID] ENSP00000476514 [CCDS] - [UniProt] V9GY89 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-015 [Transcript ID] ENST00000590755 [bp] 547 [Protein] 55aa [Translation ID] ENSP00000476667 [CCDS] - [UniProt] V9GYE4 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-012 [Transcript ID] ENST00000590408 [bp] 433 [Protein] 42aa [Translation ID] ENSP00000476869 [CCDS] - [UniProt] V9GYL0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-013 [Transcript ID] ENST00000591968 [bp] 943 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-010 [Transcript ID] ENST00000589598 [bp] 596 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-008 [Transcript ID] ENST00000590731 [bp] 557 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-007 [Transcript ID] ENST00000588719 [bp] 484 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-011 [Transcript ID] ENST00000593085 [bp] 1763 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
326b5c4e_pt__PEPD_001__ENST00000244137___Biotype
|
[Name] PEPD-005 [Transcript ID] ENST00000593163 [bp] 1045 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PEPD-001 (ENST00000244137)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000124299;r=19:33386950-33521794;t=ENST00000244137
|
16/1438042987866.61_20150728002307-00288-ip-10-236-191-2_433705747_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000075448 [bp] 9526 [Protein] 509aa [Translation ID] ENSMUSP00000074899 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS18373 [UniProt] Q02780 [RefSeq] NM_001122952 NM_010905 NP_001116424 NP_035035 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
Nfia-001
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000092532 [bp] 9382 [Protein] 466aa [Translation ID] ENSMUSP00000130032 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS51234 [UniProt] Q02780 [RefSeq] NM_001122953 NP_001116425 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
Nfia-201
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000052018 [bp] 9249 [Protein] 487aa [Translation ID] ENSMUSP00000099856 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1AUB9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
Nfia-004
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000107062 [bp] 9239 [Protein] 498aa [Translation ID] ENSMUSP00000102677 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1AUC0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
Nfia-003
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000107057 [bp] 8913 [Protein] 380aa [Translation ID] ENSMUSP00000102672 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1AUB8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
Nfia-002
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000152023 [bp] 851 [Protein] 225aa [Translation ID] ENSMUSP00000114880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1AUB6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
Nfia-005
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000148930 [bp] 821 [Protein] 274aa [Translation ID] ENSMUSP00000122641 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F7CDR2 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
Nfia-007
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
5177abcd_ene__Nfia__ENSMUSG00000028565___Name
|
[Transcript ID] ENSMUST00000133011 [bp] 1649 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
|
Nfia-006
|
[
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"2",
"0",
"1"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"4"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"3"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"2"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"5"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"7"
],
[
"N",
"f",
"i",
"a",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Nfia (ENSMUSG00000028565)
|
Name
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000028565;r=4:97772734-98118874
|
16/1438042988312.76_20150728002308-00074-ip-10-236-191-2_430264250_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-001 [Transcript ID] ENST00000256398 [bp] 3452 [Protein] 547aa [Translation ID] ENSP00000256398 [CCDS] CCDS6065 [UniProt] Q9H9T3 [RefSeq] NM_018091 NP_060561 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-010 [Transcript ID] ENST00000521015 [bp] 3158 [Protein] 533aa [Translation ID] ENSP00000428449 [CCDS] CCDS75717 [UniProt] Q9H9T3 [RefSeq] NM_001284222 NP_001271151 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-201 [Transcript ID] ENST00000380353 [bp] 3078 [Protein] 455aa [Translation ID] ENSP00000369711 [CCDS] CCDS64860 [UniProt] Q9H9T3 [RefSeq] NM_001284226 NP_001271155 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-202 [Transcript ID] ENST00000537665 [bp] 3053 [Protein] 428aa [Translation ID] ENSP00000445558 [CCDS] CCDS64861 [UniProt] Q9H9T3 [RefSeq] NM_001284224 NM_001284225 NP_001271153 NP_001271154 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-003 [Transcript ID] ENST00000524103 [bp] 1914 [Protein] 475aa [Translation ID] ENSP00000429180 [CCDS] CCDS75718 [UniProt] B4DKA4 [RefSeq] NM_001284220 NP_001271149 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-017 [Transcript ID] ENST00000523357 [bp] 874 [Protein] 140aa [Translation ID] ENSP00000427833 [CCDS] - [UniProt] H0YAP7 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-018 [Transcript ID] ENST00000517975 [bp] 680 [Protein] 66aa [Translation ID] ENSP00000430942 [CCDS] - [UniProt] H0YC54 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-011 [Transcript ID] ENST00000521570 [bp] 656 [Protein] 191aa [Translation ID] ENSP00000428532 [CCDS] - [UniProt] E5RHR2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-007 [Transcript ID] ENST00000520288 [bp] 566 [Protein] 134aa [Translation ID] ENSP00000429248 [CCDS] - [UniProt] E5RIZ7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-008 [Transcript ID] ENST00000521099 [bp] 545 [Protein] 106aa [Translation ID] ENSP00000429573 [CCDS] - [UniProt] E5RHY2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-009 [Transcript ID] ENST00000520270 [bp] 545 [Protein] 113aa [Translation ID] ENSP00000429446 [CCDS] - [UniProt] E5RIC0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-004 [Transcript ID] ENST00000518112 [bp] 2059 [Protein] 45aa [Translation ID] ENSP00000429465 [CCDS] - [UniProt] E5RG26 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-005 [Transcript ID] ENST00000519261 [bp] 1924 [Protein] 41aa [Translation ID] ENSP00000428357 [CCDS] - [UniProt] E5RIU1 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-002 [Transcript ID] ENST00000523687 [bp] 1923 [Protein] 45aa [Translation ID] ENSP00000430253 [CCDS] - [UniProt] E5RG26 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-014 [Transcript ID] ENST00000523760 [bp] 879 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-016 [Transcript ID] ENST00000520110 [bp] 779 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-019 [Transcript ID] ENST00000522063 [bp] 563 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-012 [Transcript ID] ENST00000521938 [bp] 1004 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
b012b49e___Gene__ELP3__ENSG00000134014___Biotype
|
[Name] ELP3-015 [Transcript ID] ENST00000520011 [bp] 472 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ELP3 (ENSG00000134014)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000134014;r=8:28089673-28191156
|
16/1438042988312.76_20150728002308-00069-ip-10-236-191-2_437908221_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000229239 [bp] 1875 [Protein] 335aa [Translation ID] ENSP00000229239 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_002046 NP_002037 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
GAPDH-001
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000396861 [bp] 1348 [Protein] 335aa [Translation ID] ENSP00000380070 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289745 NP_001276674 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
GAPDH-002
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000396858 [bp] 1292 [Protein] 293aa [Translation ID] ENSP00000380067 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58201 [UniProt] P04406 [RefSeq] NM_001256799 NP_001243728 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
GAPDH-008
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000396859 [bp] 1256 [Protein] 335aa [Translation ID] ENSP00000380068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289746 NP_001276675 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
GAPDH-003
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000396856 [bp] 1266 [Protein] 260aa [Translation ID] ENSP00000380065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EUT5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
GAPDH-004
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000619601 [bp] 1086 [Protein] 293aa [Translation ID] ENSP00000478864 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P04406 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
GAPDH-201
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000466525 [bp] 1720 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
GAPDH-007
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000466588 [bp] 1363 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
GAPDH-005
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000474249 [bp] 1333 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
GAPDH-006
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000492719 [bp] 930 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
GAPDH-011
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
91c7bd56__Gene__GAPDH__ENSG00000111640___Name
|
[Transcript ID] ENST00000496049 [bp] 390 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
GAPDH-010
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: GAPDH (ENSG00000111640)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000111640;r=12:6533927-6538374
|
16/1438042987866.61_20150728002307-00186-ip-10-236-191-2_429688128_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-202 [Transcript ID] ENST00000375069 [bp] 1538 [Protein] 420aa [Translation ID] ENSP00000364210 [CCDS] CCDS75429 [UniProt] Q15109 [RefSeq] NM_001206929 NP_001193858 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-204 [Transcript ID] ENST00000438221 [bp] 1493 [Protein] 363aa [Translation ID] ENSP00000387887 [CCDS] CCDS56417 [UniProt] Q15109 [RefSeq] NM_001206934 NP_001193863 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-001 [Transcript ID] ENST00000375076 [bp] 1492 [Protein] 404aa [Translation ID] ENSP00000364217 [CCDS] CCDS4746 [UniProt] Q15109 [RefSeq] NM_001136 NM_001206932 NP_001127 NP_001193861 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-002 [Transcript ID] ENST00000375055 [bp] 1369 [Protein] 347aa [Translation ID] ENSP00000364195 [CCDS] CCDS56418 [UniProt] Q15109 [RefSeq] NM_001206936 NM_001206940 NM_001206954 NM_001206966 NP_001193865 NP_001193869 NP_001193883 NP_001193895 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-004 [Transcript ID] ENST00000375067 [bp] 1250 [Protein] 342aa [Translation ID] ENSP00000364208 [CCDS] CCDS4747 [UniProt] Q15109 [RefSeq] NM_172197 NP_751947 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-203 [Transcript ID] ENST00000375070 [bp] 1463 [Protein] 294aa [Translation ID] ENSP00000364211 [CCDS] - [UniProt] A8MS87 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-206 [Transcript ID] ENST00000620802 [bp] 737 [Protein] 153aa [Translation ID] ENSP00000484081 [CCDS] - [UniProt] Q3L1R2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-008 [Transcript ID] ENST00000450110 [bp] 716 [Protein] 234aa [Translation ID] ENSP00000398466 [CCDS] - [UniProt] Q5SSZ3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-007 [Transcript ID] ENST00000375056 [bp] 715 [Protein] 233aa [Translation ID] ENSP00000364196 [CCDS] - [UniProt] Q5SSZ2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-201 [Transcript ID] ENST00000375065 [bp] 665 [Protein] 133aa [Translation ID] ENSP00000364206 [CCDS] - [UniProt] C0IP14 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-205 [Transcript ID] ENST00000538695 [bp] 487 [Protein] 128aa [Translation ID] ENSP00000445389 [CCDS] - [UniProt] B5A982 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-003 [Transcript ID] ENST00000484849 [bp] 1597 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-006 [Transcript ID] ENST00000473619 [bp] 932 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-005 [Transcript ID] ENST00000488669 [bp] 887 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
1a084825_pt__AGER_004__ENST00000375067___Biotype
|
[Name] AGER-009 [Transcript ID] ENST00000469940 [bp] 557 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: AGER-004 (ENST00000375067)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000204305;r=6:32180968-32184237;t=ENST00000375067
|
16/1438042988312.76_20150728002308-00259-ip-10-236-191-2_434453692_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-001 [Transcript ID] ENST00000342228 [bp] 3657 [Protein] 652aa [Translation ID] ENSP00000340465 [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_006749 NP_006740 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-002 [Transcript ID] ENST00000520262 [bp] 2992 [Protein] 652aa [Translation ID] ENSP00000429754 [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_001257180 NP_001244109 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-003 [Transcript ID] ENST00000520179 [bp] 2284 [Protein] 652aa [Translation ID] ENSP00000429712 [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_001257181 NP_001244110 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-009 [Transcript ID] ENST00000522707 [bp] 751 [Protein] 47aa [Translation ID] ENSP00000429299 [CCDS] - [UniProt] E5RIX1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-005 [Transcript ID] ENST00000518717 [bp] 573 [Protein] 78aa [Translation ID] ENSP00000430166 [CCDS] - [UniProt] E5RGG8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-013 [Transcript ID] ENST00000518384 [bp] 557 [Protein] 28aa [Translation ID] ENSP00000430462 [CCDS] - [UniProt] E5RJW9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-010 [Transcript ID] ENST00000517366 [bp] 533 [Protein] 71aa [Translation ID] ENSP00000427756 [CCDS] - [UniProt] E5RGJ6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-014 [Transcript ID] ENST00000524211 [bp] 968 [Protein] 105aa [Translation ID] ENSP00000429989 [CCDS] - [UniProt] E5RGM8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-006 [Transcript ID] ENST00000523340 [bp] 1265 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-011 [Transcript ID] ENST00000518660 [bp] 763 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-004 [Transcript ID] ENST00000524237 [bp] 545 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-007 [Transcript ID] ENST00000521455 [bp] 411 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-008 [Transcript ID] ENST00000519463 [bp] 388 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
0d6414bb__SLC20A2_004__ENST00000524237___Biotype
|
[Name] SLC20A2-012 [Transcript ID] ENST00000522401 [bp] 577 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC20A2-004 (ENST00000524237)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000524237
|
16/1438042987552.57_20150728002307-00069-ip-10-236-191-2_421385410_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-002 [Transcript ID] ENST00000327247 [bp] 2387 [Protein] 536aa [Translation ID] ENSP00000314508 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_001005741 NM_001005742 NP_001005741 NP_001005742 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-001 [Transcript ID] ENST00000368373 [bp] 2276 [Protein] 536aa [Translation ID] ENSP00000357357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_000157 NP_000148 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-015 [Transcript ID] ENST00000427500 [bp] 2063 [Protein] 487aa [Translation ID] ENSP00000402577 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53374 [UniProt] P04062 [RefSeq] NM_001171812 NP_001165283 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-016 [Transcript ID] ENST00000428024 [bp] 1817 [Protein] 449aa [Translation ID] ENSP00000397986 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53373 [UniProt] P04062 [RefSeq] NM_001171811 NP_001165282 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-012 [Transcript ID] ENST00000493842 [bp] 1020 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-005 [Transcript ID] ENST00000478472 [bp] 1005 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-010 [Transcript ID] ENST00000491081 [bp] 892 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
75f82615_ipt__GBA_002__ENST00000327247___Flags
|
[Name] GBA-013 [Transcript ID] ENST00000473570 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: GBA-002 (ENST00000327247)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000177628;r=1:155234452-155244670;t=ENST00000327247
|
16/1438042988312.76_20150728002308-00087-ip-10-236-191-2_429684368_0.json
|
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