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4bee7c32_ene__SLC37A4__ENSG00000137700___Flags
[Name] SLC37A4-005 [Transcript ID] ENST00000532888 [bp] 1351 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Variation image - Gene: SLC37A4 (ENSG00000137700)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000137700;r=11:118894824-118901616
44/1438042990445.44_20150728002310-00341-ip-10-236-191-2_419358090_0.json
4bee7c32_ene__SLC37A4__ENSG00000137700___Flags
[Name] SLC37A4-014 [Transcript ID] ENST00000525787 [bp] 1058 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Variation image - Gene: SLC37A4 (ENSG00000137700)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000137700;r=11:118894824-118901616
44/1438042990445.44_20150728002310-00341-ip-10-236-191-2_419358090_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
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Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
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Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
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Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
K7ELW0
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
K7EN27
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
Q99497 V9HWC2
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
-
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt]
-
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0d27e046_t__PARK7_007__ENST00000460192___UniProt
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
-
[ [ "Q", "9", "9", "4", "9", "7", " ", "V", "9", "H", "W", "C", "2" ], [ "K", "7", "E", "L", "W", "0" ], [ "K", "7", "E", "N", "2", "7" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-001 [Transcript ID] ENST00000326139 [bp] 1602 [Protein] 423aa [Translation ID] ENSP00000320180 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5432 [UniProt] A0A090N8Y6 Q02643 [RefSeq] NM_000823 NP_000814 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-002 [Transcript ID] ENST00000409904 [bp] 1613 [Protein] 359aa [Translation ID] ENSP00000387113 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9HB45 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-005 [Transcript ID] ENST00000409316 [bp] 1292 [Protein] 151aa [Translation ID] ENSP00000386602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9HB43 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-201 [Transcript ID] ENST00000611037 [bp] 923 [Protein] 207aa [Translation ID] ENSP00000480159 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8N6C4 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-003 [Transcript ID] ENST00000396227 [bp] 1459 [Protein] 145aa [Translation ID] ENSP00000379529 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q9HB44 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-004 [Transcript ID] ENST00000337750 [bp] 1241 [Protein] 68aa [Translation ID] ENSP00000338184 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q9HB42 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-006 [Transcript ID] ENST00000461424 [bp] 1054 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-010 [Transcript ID] ENST00000463164 [bp] 543 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-011 [Transcript ID] ENST00000473133 [bp] 361 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-007 [Transcript ID] ENST00000466427 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-009 [Transcript ID] ENST00000461390 [bp] 551 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
45c0fef1_t__GHRHR_004__ENST00000337750___Flags
[Name] GHRHR-008 [Transcript ID] ENST00000489974 [bp] 524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GHRHR-004 (ENST00000337750)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000106128;r=7:30969533-30979532;t=ENST00000337750
44/1438042990445.44_20150728002310-00230-ip-10-236-191-2_428347021_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
622bf241_t__PARK7_007__ENST00000460192___Biotype
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PARK7-007 (ENST00000460192)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116288;r=1:8025411-8045342;t=ENST00000460192
44/1438042990445.44_20150728002310-00229-ip-10-236-191-2_433854705_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-001 [Transcript ID] ENST00000379727 [bp] 2685 [Protein] 512aa [Translation ID] ENSP00000369050 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10268 [UniProt] A0N0X8 P04798 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-201 [Transcript ID] ENST00000395048 [bp] 2608 [Protein] 512aa [Translation ID] ENSP00000378488 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10268 [UniProt] A0N0X8 P04798 [RefSeq] NM_000499 NP_000490 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-002 [Transcript ID] ENST00000567032 [bp] 2107 [Protein] 512aa [Translation ID] ENSP00000456585 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10268 [UniProt] A0N0X8 P04798 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-203 [Transcript ID] ENST00000617691 [bp] 2521 [Protein] 483aa [Translation ID] ENSP00000482863 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EMT5 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-202 [Transcript ID] ENST00000612821 [bp] 2402 [Protein] 484aa [Translation ID] ENSP00000479744 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5J9B1 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-003 [Transcript ID] ENST00000395049 [bp] 1594 [Protein] 483aa [Translation ID] ENSP00000378489 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EMT5 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-004 [Transcript ID] ENST00000564596 [bp] 988 [Protein] 157aa [Translation ID] ENSP00000457668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P04798 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-006 [Transcript ID] ENST00000566503 [bp] 796 [Protein] 175aa [Translation ID] ENSP00000455846 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A4F3V8 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-005 [Transcript ID] ENST00000569630 [bp] 1544 [Protein] 189aa [Translation ID] ENSP00000455051 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P04798 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
0a657ace_Gene__CYP1A1__ENSG00000140465___Flags
[Name] CYP1A1-007 [Transcript ID] ENST00000562201 [bp] 1192 [Protein] 189aa [Translation ID] ENSP00000455340 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P04798 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP1A1 (ENSG00000140465)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140465;r=15:74719542-74725610
44/1438042981525.10_20150728002301-00279-ip-10-236-191-2_427008380_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-201 [Transcript ID] ENST00000458497 [bp] 5410 [Protein] 1244aa [Translation ID] ENSP00000398048 [CCDS] CCDS3697 [UniProt] Q96QP1 [RefSeq] NM_001102406 NM_025144 NP_001095876 NP_079420 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-202 [Transcript ID] ENST00000504176 [bp] 5203 [Protein] 1166aa [Translation ID] ENSP00000426044 [CCDS] CCDS58923 [UniProt] Q96QP1 [RefSeq] NM_001253884 NP_001240813 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-001 [Transcript ID] ENST00000177648 [bp] 4537 [Protein] 1244aa [Translation ID] ENSP00000177648 [CCDS] CCDS3697 [UniProt] Q96QP1 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-008 [Transcript ID] ENST00000509722 [bp] 3931 [Protein] 133aa [Translation ID] ENSP00000424492 [CCDS] - [UniProt] D6RB29 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-005 [Transcript ID] ENST00000505127 [bp] 2295 [Protein] 304aa [Translation ID] ENSP00000425559 [CCDS] - [UniProt] B3KUH8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-006 [Transcript ID] ENST00000515330 [bp] 1008 [Protein] 168aa [Translation ID] ENSP00000423978 [CCDS] - [UniProt] B4E0R2 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-013 [Transcript ID] ENST00000515106 [bp] 569 [Protein] 109aa [Translation ID] ENSP00000425273 [CCDS] - [UniProt] D6RDN6 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-003 [Transcript ID] ENST00000505912 [bp] 1287 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-009 [Transcript ID] ENST00000502366 [bp] 716 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-015 [Transcript ID] ENST00000508589 [bp] 577 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-010 [Transcript ID] ENST00000505176 [bp] 565 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-012 [Transcript ID] ENST00000426472 [bp] 549 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-017 [Transcript ID] ENST00000514594 [bp] 304 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-007 [Transcript ID] ENST00000504745 [bp] 5633 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-002 [Transcript ID] ENST00000509688 [bp] 2749 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-011 [Transcript ID] ENST00000504488 [bp] 590 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-016 [Transcript ID] ENST00000512847 [bp] 580 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
678d0327__Gene__ALPK1__ENSG00000073331___Biotype
[Name] ALPK1-014 [Transcript ID] ENST00000509209 [bp] 515 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ALPK1 (ENSG00000073331)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000073331;r=4:112285509-112442620
44/1438042990445.44_20150728002310-00240-ip-10-236-191-2_430883575_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-002 [Transcript ID] ENSMUST00000005815 [bp] 5214 [Protein] 979aa [Translation ID] ENSMUSP00000005815 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS51525 [UniProt] P05532 [RefSeq] NM_001122733 NP_001116205 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-001 [Transcript ID] ENSMUST00000144270 [bp] 5241 [Protein] 975aa [Translation ID] ENSMUSP00000116465 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F7DD14 [RefSeq] NM_021099 NP_066922 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-003 [Transcript ID] ENSMUST00000148993 [bp] 842 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-006 [Transcript ID] ENSMUST00000143221 [bp] 648 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-004 [Transcript ID] ENSMUST00000136002 [bp] 392 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
5be8a3f2_Gene__Kit__ENSMUSG00000005672___Flags
[Name] Kit-005 [Transcript ID] ENSMUST00000151357 [bp] 354 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Kit (ENSMUSG00000005672)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000005672;r=5:75574916-75656722
44/1438042990445.44_20150728002310-00080-ip-10-236-191-2_434829860_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-201 [Transcript ID] ENST00000396356 [bp] 8865 [Protein] 808aa [Translation ID] ENSP00000379644 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7821 [UniProt] P35712 [RefSeq] NM_033326 NP_201583 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-001 [Transcript ID] ENST00000316399 [bp] 8808 [Protein] 808aa [Translation ID] ENSP00000324948 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7821 [UniProt] P35712 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-002 [Transcript ID] ENST00000528252 [bp] 2707 [Protein] 801aa [Translation ID] ENSP00000432134 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53604 [UniProt] P35712 [RefSeq] NM_001145811 NP_001139283 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-003 [Transcript ID] ENST00000527619 [bp] 2699 [Protein] 804aa [Translation ID] ENSP00000434455 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53605 [UniProt] P35712 [RefSeq] NM_017508 NP_059978 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-012 [Transcript ID] ENST00000528429 [bp] 2656 [Protein] 828aa [Translation ID] ENSP00000433233 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P35712 [RefSeq] NM_001145819 NP_001139291 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-009 [Transcript ID] ENST00000533411 [bp] 586 [Protein] 159aa [Translation ID] ENSP00000436170 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PQL4 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-008 [Transcript ID] ENST00000529469 [bp] 549 [Protein] 79aa [Translation ID] ENSP00000432596 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PQ67 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-010 [Transcript ID] ENST00000526673 [bp] 534 [Protein] 139aa [Translation ID] ENSP00000434892 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PN02 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-011 [Transcript ID] ENST00000530378 [bp] 1818 [Protein] 159aa [Translation ID] ENSP00000432577 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PQ78 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-006 [Transcript ID] ENST00000533658 [bp] 1202 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-015 [Transcript ID] ENST00000524520 [bp] 709 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-017 [Transcript ID] ENST00000525835 [bp] 660 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-007 [Transcript ID] ENST00000527840 [bp] 574 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-016 [Transcript ID] ENST00000525259 [bp] 574 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-013 [Transcript ID] ENST00000524650 [bp] 534 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-014 [Transcript ID] ENST00000531297 [bp] 429 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
c48cf0a5_pt__SOX6_008__ENST00000529469___Flags
[Name] SOX6-005 [Transcript ID] ENST00000533870 [bp] 7224 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SOX6-008 (ENST00000529469)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000110693;r=11:16341011-16434450;t=ENST00000529469
44/1438042981525.10_20150728002301-00187-ip-10-236-191-2_428724220_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-001 [Transcript ID] ENST00000404648 [bp] 1760 [Protein] 437aa [Translation ID] ENSP00000384860 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47153 [UniProt] P02679 [RefSeq] NM_000509 NP_000500 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-002 [Transcript ID] ENST00000336098 [bp] 1659 [Protein] 453aa [Translation ID] ENSP00000336829 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3788 [UniProt] P02679 [RefSeq] NM_021870 NP_068656 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-007 [Transcript ID] ENST00000407946 [bp] 1636 [Protein] 461aa [Translation ID] ENSP00000384552 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JC84 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-006 [Transcript ID] ENST00000405164 [bp] 1539 [Protein] 445aa [Translation ID] ENSP00000384101 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JEU5 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-008 [Transcript ID] ENST00000443553 [bp] 789 [Protein] 123aa [Translation ID] ENSP00000407562 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JU00 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-009 [Transcript ID] ENST00000393846 [bp] 641 [Protein] 119aa [Translation ID] ENSP00000377429 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JPQ9 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-004 [Transcript ID] ENST00000492082 [bp] 2031 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-003 [Transcript ID] ENST00000465913 [bp] 1573 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-011 [Transcript ID] ENST00000473393 [bp] 996 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-010 [Transcript ID] ENST00000465336 [bp] 722 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-012 [Transcript ID] ENST00000464532 [bp] 703 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
bb0018bf_ipt__FGG_007__ENST00000407946___Flags
[Name] FGG-005 [Transcript ID] ENST00000484695 [bp] 354 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FGG-007 (ENST00000407946)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171557;r=4:154604610-154612635;t=ENST00000407946
44/1438042990445.44_20150728002310-00275-ip-10-236-191-2_424543054_0.json
741bd3d0_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000389224
44/1438042990445.44_20150728002310-00215-ip-10-236-191-2_432749403_0.json
741bd3d0_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000389224
44/1438042990445.44_20150728002310-00215-ip-10-236-191-2_432749403_0.json
741bd3d0_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000389224
44/1438042990445.44_20150728002310-00215-ip-10-236-191-2_432749403_0.json