lgonzalez1 commited on
Commit
76fe695
·
1 Parent(s): 64541c9
multi_omics_transcript_expression.py CHANGED
@@ -264,6 +264,8 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  "chromosome": datasets.Value(dtype="string"),
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  "RNA": datasets.Value("string"),
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  "Protein": datasets.Value("string"),
 
 
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  }
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  )
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  return datasets.DatasetInfo(
@@ -318,6 +320,8 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  )
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  if padded_sequence:
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  yield key, {
 
 
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  "labels_name": labels_name,
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  "labels": labels_row.to_numpy(),
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  "DNA": standardize_sequence(padded_sequence),
 
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  "chromosome": datasets.Value(dtype="string"),
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  "RNA": datasets.Value("string"),
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  "Protein": datasets.Value("string"),
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+ "transcript_id": datasets.Value("string"),
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+ "gene_id": datasets.Value("string"),
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  }
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  )
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  return datasets.DatasetInfo(
 
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  )
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  if padded_sequence:
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  yield key, {
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+ "transcript_id":coordinates_row["transcript_id_gtex"],
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+ "gene_id":coordinates_row["gene_id_gtex"],
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  "labels_name": labels_name,
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  "labels": labels_row.to_numpy(),
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  "DNA": standardize_sequence(padded_sequence),