lgonzalez1 commited on
Commit
64541c9
·
1 Parent(s): 827c802
multi_omics_transcript_expression.py CHANGED
@@ -298,7 +298,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  length and standardized before returning.
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  """
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  df = pd.read_csv(self.df_csv_file)
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- df = df.loc[df["chr"]!= "chrMT"]
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  labels_name = LABELS_V1
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  split_df = df.loc[df["split"] == split]
@@ -326,10 +326,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  "Protein": coordinates_row["Protein"],
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  }
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  key += 1
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- logger.info(
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- f"filtering out {len(split_df)-key} "
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- f"elements from the dataset"
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- )
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  """
 
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  length and standardized before returning.
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  """
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  df = pd.read_csv(self.df_csv_file)
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+ df = df.loc[df["chr"] != "chrMT"]
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  labels_name = LABELS_V1
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  split_df = df.loc[df["split"] == split]
 
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  "Protein": coordinates_row["Protein"],
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  }
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  key += 1
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+ logger.info(f"filtering out {len(split_df)-key} " f"elements from the dataset")
 
 
 
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  """