[project]
name = "lynxkite-bio"
version = "0.1.0"
description = "Additional boxes for LynxKite Graph Analytics that add tools for biology."
readme = "README.md"
requires-python = ">=3.11"
dependencies = [
    "bionemo>=0.3.1.post2",
    "cellxgene-census>=1.17.0",
    "httpx>=0.28.1",
    "kubernetes>=32.0.1",
    "lynxkite-core",
    "lynxkite-graph-analytics",
    "numpy>=2.2.6",
    "openai>=1.97.0",
    "pandas>=2.2.3",
    "rdkit>=2024.9.5",
    "requests>=2.32.4",
    "scanpy>=1.11.3",
    "scikit-learn>=1.7.1",
    "scipy>=1.15.2",
    "torch>=2.7.0",
]
classifiers = ["Private :: Do Not Upload"]

[tool.uv.sources]
lynxkite-core = { git = "https://github.com/lynxkite/lynxkite-2000", subdirectory = "lynxkite-core" }
lynxkite-graph-analytics = { git = "https://github.com/lynxkite/lynxkite-2000", subdirectory = "lynxkite-graph-analytics" }

[build-system]
requires = ["setuptools", "wheel", "setuptools-scm"]
build-backend = "setuptools.build_meta"

[tool.setuptools.packages.find]
namespaces = true
where = ["src"]