Merge branch 'master' of github.com:fuxialexander/getdemo

README.md

@@ -35,16 +35,16 @@ data
 git clone --recursive git@github.com:fuxialexander/getdemo.git
 cd getdemo
 docker pull fuxialexander/getdemo:latest
-docker run -it -v "/path/to/data:/data" --rm -p 7681:7681 fuxialexander/getdemo
-or
+docker run -it -v "/path/to/data:/data" --rm -p 7860:7860 fuxialexander/getdemo
+# or
 singularity run  -w --bind /manitou/pmg/users/xf2217/getdemo:/app --bind /manitou/pmg/users/xf2217/demo_data:/data --bind /pmglocal/xf2217/tmp:/tmp --no-home --pwd /app getdemo
 ```
-The gradio interface will be available at http://127.0.0.1:7681, a sharable link will be printed in the terminal.
+The gradio interface will be available at http://127.0.0.1:7860, a sharable link will be printed in the terminal.
 
 # Build
 ```bash
 git clone --recursive git@github.com:fuxialexander/getdemo.git
 cd getdemo
 docker build -t getdemo .
-docker run -it -v "/path/to/data:/data" --rm -p 7681:7681 getdemo
+docker run -it -v "/path/to/data:/data" --rm -p 7860:7860 getdemo
 ```

app/main.py

@@ -33,7 +33,7 @@ args.add_argument("-n", "--host", type=str, default="127.0.0.1")
 args = args.parse_args()
 
 GET_CONFIG = load_config(
-    "/app/atac_rna_data_processing/atac_rna_data_processing/config/GET"
+    "/app/modules/atac_rna_data_processing/atac_rna_data_processing/config/GET"
 )
 GET_CONFIG.celltype.jacob = True
 GET_CONFIG.celltype.num_cls = 2