Datasets:

PrismaX
/

SFE

+# STOCKHOLM 1.0
+#=GF ID msiK
+#=GF AC RF01747
+#=GF DE msiK RNA
+#=GF AU Weinberg Z; 0000-0002-6681-3624
+#=GF GA 33.0
+#=GF NC 32.9
+#=GF TC 34.6
+#=GF SE Published; PMID:20230605;
+#=GF SS Published; PMID:20230605;
+#=GF TP Cis-reg;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 18.00 -Z 2958934 CM SEQDB
+#=GF DR SO; 0005836; regulatory_region;
+#=GF RN [1]
+#=GF RM 20230605
+#=GF RT Comparative genomics reveals 104 candidate structured RNAs from bacteria,
+#=GF RT archaea and their metagenomes.
+#=GF RA Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR
+#=GF RL Genome Biol. 2010;11:R31.
+#=GF WK MsiK_RNA_motif
+#=GF ** seedtax: Bacteria; unclassified sequences
+#=GF SQ 120
+BAAY01007686.1/255-195       AAAGAA-----AUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAU--GACAAAUC
+AACY023308612.1/1044-986     GGCCAUCA-----CCUUCAUCCACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+BX248355.1/160867-160810     CACUUUAU----UUCUUCUACU-CGGAUCGUUCGGCACGUACCUGCCGAUA-AAGAA---UGGAGUU-
+AACY020556781.1/1408-1350    CGAACA-----UCGCUCUUACUUCGGAUCGUCCGGCACGUUCCUGCCGGUGAGAG-GA--ACCACCA-
+AACY023290927.1/440-498      GGCCAUCA-----CCUUCAUCCUCGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+AACY023803192.1/795-737      GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+AACY023828838.1/892-834      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020296654.1/3720-3776    GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023817491.1/7-64         UGUUGGAUG-----CUUUCACCACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023314832.1/131-189      CGUGAGAC-----CUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGAAGAAG----GAGUGCUA
+AACY022653449.1/402-460      GCGCGGCA-----UCCAUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGGA----GAAAAUAA
+AACY021215036.1/138-80       UGGA-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+AM849034.1/2895497-2895439   GCAUCACA-----UCCAUCACCACGGAUCGUCGGGCACGUACCUGCCCGUGAAGGA----GAACACCG
+AACY020059319.1/116-58       UGGA-----CUUGCUUCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAGAGA---
+CP000667.1/4785498-4785555   CGGCCCGC-----UCUUUCACU-CGGAUCGUCCGGCACGUUCCUGCCGGUGAAAGG----AAGCACCC
+AACY022515996.1/291-233      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY023808612.1/943-1001     GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGU-AAGAGA---GGAAAAA-
+AE014295.3/1661060-1661118   GAACAA-----AUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAU--UAGUAA--
+AACY020309138.1/212-270      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020711540.1/892-834      GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+AACY020801666.1/396-454      UGGC-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGUGCAU---
+AACY023816586.1/1430-1488    GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+AE017283.1/439778-439720     GUCACCGA-----UUUUCCACAACGGAUCGUCGGGCACGUACCUGCCCGUGGAAAG----GAACAACG
+CP001341.1/953078-953020     AAACAUGAA----CCAUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAA-GG----GAUUGAUA
+AAMN01000005.1/40921-40863   GGGUUU-----UUCCCUUUACAACGGAUCGUCCGGCACGUUCCUGCCGGUGAAGG-AA--GGCAAUG-
+AACY020530366.1/1402-1460    GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020523976.1/2197-2141    GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023442678.1/506-448      CCCA-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAGGAA---
+AACY023841016.1/464-520      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY021171437.1/836-780      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY021496387.1/154-96       GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020303265.1/68-126       GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020599560.1/709-651      UGGA-----CUUGCUUCAUCCAACGGAUGGUCGGGCACGUACUUGCCCCGAGAAGG-AAGAGAAA---
+AACY020064545.1/673-730      AAGAGGC----AC-UCGUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAGU--AGAAA---
+AACY020470988.1/2403-2346    ACGAGGC----ACUC-AUCACGAAGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAGU--AGAAA---
+AACY023319023.1/289-231      GGCCAUCA-----CCUUCAUCCACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+AACY023331894.1/236-178      GGCCAUCA-----CCUUCAUCCACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+AACY023355258.1/868-926      AAAUCGUU----UCCAUUCACUACGGAUCGUCCGGCACGUACCUGCCGGUGAA-GGA---GAAAACA-
+AACY020170145.1/1281-1223    AGGAUGA-----CCUAUCUCCAACGGAUCGUCCGGCACGUACCUGCCGGGAGA-GGG---AGCUAACG
+AACY023323829.1/260-317      GGCUAACG-----CCUUACCCU-CGGAACGUCGGGCACGUACCUGCCCGGAUAAGG----AAGAAAUA
+AACY023430589.1/1577-1636    -CCGUGAGA---CCUUCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGA-GAAGG---AGUAAACA
+AACY020169821.1/1024-1081    UGGUCGCAA-----UACUUCCAAAGGAUCGUCGGGCACGUACCUGCCCGGAAGGA-----GAAAAAAU
+AACY020177699.1/315-373      UGGA-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+AACY020051425.1/729-671      UGGA-----CUUGCUUCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAGAGA---
+AACY023443860.1/741-683      CGUGAGAC-----CUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGAAGAGG----GAGUAAUA
+AACY020058740.1/867-924      AAGAGGC----AC-UCGUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAGU--AGAAA---
+AACY023834223.1/295-237      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY022769167.1/65-123       GGGA-----CUUACUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAGAAA---
+AACY023291338.1/1308-1251    GCCAUAAC-----CUUCAUCCU-CGGAUCGUCGGGCACGUACCAGCCCGGAUAAGG----AAGUCUUC
+AP009256.1/2026471-2026413   ACAAAA-----AUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAU--GACAAA--
+AACY023838183.1/673-731      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY023836095.1/167-109      GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+AACY021127318.1/81-23        GGGC-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+AACY023352948.1/821-764      AGCGAUCA----C-CUAUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAG---AAACAA--
+AACY023256209.1/29-86        ACGAGGC----ACUC-AUCACGAAGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAGU--AGAAA---
+AACY020538448.1/527-469      CUCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY023318012.1/501-443      GGCCAUCA-----CCUUCAUCCACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGAAAU
+AACY022901723.1/625-567      GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+AE016822.1/1880494-1880552   CCACAUCA-----UCCAUCACUACGGAUCGUCCGGCACGUACCUGCCGGUGAAGGA----GAACACGA
+AACY023844945.1/1161-1219    GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY021052297.1/178-120      GGAGUAAC-----CUCCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGAAGGAG----AGCUAGAA
+AACY021345393.1/154-96       GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020554771.1/6628-6686    UGGA-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+AACY020176623.1/1738-1796    AAAAAGAC-----CUUCAUCCAACGGAACGUCGGGCACGUACCUGCCCGGAAGAAG----GAGUAAAA
+AACY023795141.1/1172-1114    GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020619186.1/175-233      CUCG-----CUUACUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+ABMI01052056.1/105-49        GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023836412.1/551-495      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023792959.1/1429-1476    ---------------UUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023294700.1/958-1016     CAGUA----ACU-CUUCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGAGAAGG-AGUAAGUA---
+AACY022775623.1/200-141      GCUGGCG-----CCUUUAUCCAACGGAUCGUCGGGCUCGUACCUGCCCGGUUAAGGG---AGUUACUU
+AACY020468017.1/554-613      -CCGUGAGA---CCUUCAUCCAACGGAUCGUCGGGCACGUACCUGCCCGGA-GAAGG---AGUAAACA
+AACY023982826.1/13-71        GACCAUCA-----CCUUCAUCCACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+AACY023340538.1/662-720      GCUCAUCA-----CCUUCACCUACGGAUCGUCGAGCACGUACCUGCUCGGAGAAGG----AGAAAUUC
+AACY020296024.1/375-317      CGAACA-----UCUCUCUUACUUCGGAUCGUCCGGCACGUUCCUGCCGGUGAGAG-GA--ACCACCU-
+AACY023434470.1/1454-1512    UGGA-----CUUACUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGAAAAA---
+U12007.1/36-95               -CACCACCA---CCUUCCUACAACGGAUCGUCCGGCACGUUCCUGCCGGUAG-AAGG---GGGCCCUU
+AACY023331001.1/307-249      UGUGAGAC-----CUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGAAGAGG----GAGAAAUA
+BA000030.3/4887082-4887138   UGGACACCA-----CCUUUACU-CGGAUCGUCCGGCACGUUCCUGCCGGUGAAGG-----GGGCCCCU
+AACY020525511.1/587-645      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020011956.1/378-436      GGGUGGGU----UCCAUUCACAAAGGAUCGUCCGGCACGUACCUGCCGGUGAA-GGA---GAAAAUC-
+AAOB01000005.1/162025-162083 GAUCGCUG----UCCAUUCACUAAGGAUCGUCCGGCACGUACCUGCCGGUGAA-GGA---GAAAAAU-
+AACY020307023.1/1756-1814    GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGU-AAGAGA---GGAAAAA-
+AACY023801115.1/426-484      GGCUGUCGA----CUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAG----AGGAAAAA
+CP000750.2/1372523-1372582   -UGAAGACC---CCAUUCCACAACGGAUCGUCCGGCACGUACCUGCCGGUGGAA-GG---ACACACGA
+CP000605.1/1702669-1702727   GAACAAAU-----CCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGG----AUUAGUAA
+AACY023315685.1/655-597      GGUUAGCA-----CCUUCAUCCUCGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAAUUAC
+CP000850.1/5276815-5276872   CGGUCCGU-----UCUUUCACU-CGGAUCGUCCGGCACGUUCCUGCCGGUGAAAGG----AAGCACCC
+AACY023818985.1/972-916      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023293856.1/1006-1063    ACCAGCAC-----CUUCAUCCU-CGGACCGUCGGGCACGUACCUGCCCGGAUAAGG----AAAUGUAA
+AACY020165622.1/5444-5502    CCAC-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGUGAAA---
+AACY023826769.1/1080-1024    GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY020533395.1/706-648      GGCUGUCG----UCUCUUCACGACGGAUCGUCCGGCACGUACCUGCCGGU-AAGAGA---GGAAAAA-
+AACY023292971.1/264-205      CAGUGAGA----CCUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGA-GAAGG---AGUAAUUA
+AP006618.1/5869874-5869931   UGCCGACA-----CCCUGUACU-CGGAUCGUCCGGCACGUUCCUGCCGGUGAAGGG----AAGUAUCU
+AACY020524589.1/159-101      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY020296610.1/2203-2147    GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY020172986.1/652-594      CGUGAGAC-----CUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGAAGAGG----GAGUAAUA
+CP000474.1/988504-988446     GAAAAUGAA----CCAUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAA-GG----GAUUGAUA
+AACY020174331.1/171-229      GUGUAGGG----CUCUAUCACUACGGAUCGUCCGGCACGUACCUGCCGGUGA-GGAG---AAAAAAU-
+AACY020176753.1/132-74       UGGC-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGUGCAU---
+AACY023806029.1/782-838      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY023822562.1/1011-1067    CCGUCG------UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-GGAGA---GGAAAAA-
+AACY023799473.1/826-768      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAAA-
+AACY022641081.1/812-869      CCACCUUU-----CUUCUUACAACGGAUCGUCCGGCACGUUCCUGCCGGUGA-GAG----GACUUGUC
+AACY021867778.1/709-766      GGCUGUCG----UCUCUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUG-AGAGA---GGAAAA--
+AAQK01003194.1/85-143        ACAAAA-----AUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAU--GACAAA--
+AY842007.1/445-387           UUCACUG----UUUCUCACACUACGGAUCGUUCGGCACGUACCUGCCGAUG-GAGGAG--AUUCUG--
+AACY023826784.1/354-298      GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY020467656.1/1124-1066    GGCCAUCA-----CCUUCAUCCUCGGACCGUCGGGCACGUACCUGCCCGGAGAAGG----AGAGCAAU
+CP000431.1/4502789-4502731   CGGCACAC----CCCUAACACU-CGGAUCGUCCGGCACGUUCCUGCCGGUGG-AGGG---AUUCAUUU
+AACY023309530.1/927-871      -GGCCAGCA-----CUUAAUCCUCGGAUCGUCGGGCACGUACCUGCCCGGAUAAG-----GAAAGUGA
+CP001601.1/1416488-1416546   UUCACUG----UUUCUCACACUACGGAUCGUUCGGCACGUACCUGCCGAUG-GAGGAG--AUUCUG--
+AACY021516186.1/700-758      UGGC-----CUUGCUUCAUCCAACGGACCGUCGGGCACGUACCUGCCCGGAGAAGG-AAGUGCAU---
+AAYI02000004.1/407474-407531 CCACGG------UCACCCCACUACGGAUCGUCCGGCACGUACCUGCCGGUGGGAAGG---AAAACUC-
+AACY023307698.1/644-701      GCUGUCC-----UCUAUUCACUACGGAUCGUCCGGCACGUACCUGCCGGUGAA-GGA---GAUACAC-
+AACY020294371.1/1956-2012    GUUGGAUG------CUUUCACAACGGAUCGUCCGGCACGUACCUGCCGGUGAAGG-----AGAUAAAA
+AACY022762350.1/772-830      CGUGAGAC-----CUUCAUCCAACGGAUCGUCGGGUACGUACCUACCCGGAAGAGG----GAGAAAUA
+AACY023224611.1/1289-1232    GACGAACA----C-CCAUCACAAUGGAUCGUCCGGCACGUACCUGCCGGUGAAGGAG---AAGAUC--
+CP000509.1/1122407-1122464   CCGUGCUCA----CC-UUUACGACGGAUCGUCCGGCACGUACCUGCCGGUGAA-GG----AGUUGUUC
+#=GC SS_cons                 ::::::::....:<<<<<<<-----------<<<<<<______>>>>>>>>>>>>>....::::::::
+#=GC RF                      ggcaauca....uCcuuucaCAACGGAUCGUCcGGCACGUACCUGCCgGugaaagG....AgaaAaaa
+//

raw_data/life/L017/0005-RF02928.stockholm ADDED Viewed

	@@ -0,0 +1,265 @@

+# STOCKHOLM 1.0
+#=GF ID Actinomyces-1
+#=GF AC RF02928
+#=GF DE Actinomyces-1 RNA
+#=GF AU Weinberg Z; 0000-0002-6681-3624
+#=GF GA 39.1
+#=GF NC 38.6
+#=GF TC 56.2
+#=GF SE Weinberg Z
+#=GF SS Published; PMID:28977401;
+#=GF TP Gene; sRNA;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.02 -Z 2958934 CM SEQDB
+#=GF DR SO; 0000370; small_regulatory_ncRNA;
+#=GF RN [1]
+#=GF RM 28977401
+#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
+#=GF RT specific subsets of intergenic regions.
+#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
+#=GF RA Sherlock ME, Breaker RR
+#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
+#=GF CC Actinomyces. Lineage (Actinomycetales)
+#=GF WK Actinomyces-1_RNA_motif
+#=GF SQ 236
+URS0000D6BE00_12908/1-111   UGUGCCGCCGGACGGU-GGCGACCGCGAGACGUU--GGGG------AGCGUC--GGUGACCGGCCG-CCUCCGGAAUGCC-GG-ACCGCAG-CCCAGGGACUGCG--ACCGUGC-GCU-CGGCGAAGGAG
+URS0000D68E3C_12908/1-110   UGUGCCGCCGGACGGU-GGGUGCCGAGAGACGUU--GGGG------AGCGUC--AGUGACCGUCAC-C-CGCUGGAAGCC-GG-GACGCGG-ACCAGGGACCGCG--ACCGAGC-GCU-CGGCGAGGGAG
+URS0000D6A108_12908/1-110   GUUACCACUGAGCGGU-GGCUGUCGUGAGGUACU--GGGG------AGUACU--GCUGACCGGCGGG--UAUCGA-GUCU-GG-GCUACAG-CCAAGGGAAUG--G-GCCUGGACGUUUCAGUGAAGGAG
+URS0000D6CFB7_12908/1-110   GUUACCACUGAGCGGU-GGCUGUCGUGAGGUACU--GGGG------AGUACU--GCUGACCGGCGGG--UACCGA-GUCU-GG-GCUACAG-CCAAGGGAAUG--G-GCCUGGACGUUUCAGUGAAGGAG
+URS0000D6CBD8_12908/1-110   GUUACCACUGAACGGU-GGCUGUCGUGAGGUACU--GGGG------AGUACU--GCUGACCGGCGGG--UACCGA-GUCU-GG-GCUACAG-CCAAGGGAAUG--G-GCCUGGACGUUUCGGUGAAGGAG
+URS0000D6894D_12908/1-110   GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--GCUGACCGGUGG-C-CGCCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCAGUGAAGGAG
+URS0000D6894D_1115803/1-110 GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--GCUGACCGGUGG-C-CGCCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCAGUGAAGGAG
+URS0000D6BE5C_12908/1-110   GUCACCGCUGAACGAU-GGCGACCGCGAGGUACU--GGGG------AGUACC--GCUGACCGGUGG-C-CGCCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCAGUGAAGGAG
+URS0000D678F2_12908/1-110   GUCACCGCUGAACGAU-GGCGACCGCGAGGUACU--GGGG------AGUACC--GCUGACCGGUCA-C-CACCGA-GUCC-GG-ACCACAG-CCAAGGGAAUGUG--UUCG-GGCGUUUCAGUGAAGGAG
+URS0000D678F2_762963/1-110  GUCACCGCUGAACGAU-GGCGACCGCGAGGUACU--GGGG------AGUACC--GCUGACCGGUCA-C-CACCGA-GUCC-GG-ACCACAG-CCAAGGGAAUGUG--UUCG-GGCGUUUCAGUGAAGGAG
+URS0000D67077_12908/1-110   GUUACCGCCGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCGGUGAAGGAG
+URS0000D67077_706439/1-110  GUUACCGCCGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCGGUGAAGGAG
+URS0000D66F33_12908/1-110   GUCACCGCUGAACGGU-GGCGGCCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCAGUGAAGGAG
+URS0000D6A329_12908/1-110   GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCU-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D670F4_12908/1-110   GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D6A7A7_12908/1-110   GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D6A7A7_944560/1-110  GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D6A7A7_562973/1-110  GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCA-C-CACUGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D6D053_871541/1-110  GUCACCGCUGAACGGU-GGCGACCGUGAGGUACU--GGGG------AGUACC--ACUGACCGGCCU-C-CACUGA-GUCC-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GGCGUUUCGGUGAAGGAG
+URS0000D6B681_12908/1-110   GUCACCACUGAACGGU-GGCGACCGCGAGGUACU--GGGG------AGUACU--GCAGACCGGCCA-C-CAUCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCGGUGAAGGAG
+URS0000D689DC_653386/1-110  GUCACCACUGAACGGU-GGCGACCGCGAGGUACU--GGGG------AGUACU--GCAGACCGGCCA-C-UAUCGA-GUCU-GG-GCCACAG-CCAAGGGAAUGUG--CUCG-GACGUUUCGGUGAAGGAG
+URS0000D69F94_12908/1-112   GCCGCCGCCGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCC--GAUGAGGGGCCGG--AGCCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GGCG-CCCGGCGAAGGAG
+URS0000D689EC_12908/1-112   GCCGCCGCCGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCC--GAUGAGGGGUCGG--AGCCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GGCG-CCCGGCGAAGGAG
+URS0000D6A287_12908/1-112   GCCGCCGCCGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCC--GAUGAGGGGCCGG--AGUCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GGCG-CCCGGCGAAGGAG
+URS0000D6979D_12908/1-112   GCCGCCGCUGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCC--GAUGAGGGGCCGG--AGUCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GACG-CCCGGCGAAGGAG
+URS0000D6C965_12908/1-112   GCCGCCGCCGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCC--GAUGAGGGGCCGG--AGUCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GACG-CCCGGCGAAGGAG
+URS0000D66E5B_12908/1-112   GCCGCCGUCGGACGGU-GAGGGCCACGAGGUGCU--GGGG------AGCGCU--GAUGAGGGGCCGG--AGCCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GACG-CCCGGCGAAGGAG
+URS0000D69FBC_12908/1-112   GCCGCCGUCGGACGGC-GAGGGCCACGAGGUGCU--GGGG------AGCGCU--GAUGAGGGGCCGG--AGCCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GCCG-GACG-CCCGGCGAAGGAG
+URS0000D6B9F9_12908/1-112   GCCGCCGUCGGACGGC-GAGGGCCACGAGGUGCU--GGGG------AGCGCU--GAUGAGGGGCCGG--AGCCGA-GUCCAGG-CCCGUAAGGCAAGGGAAUUCGG-GUCG-GACG-CCCGGCGAAGGAG
+URS0000D6A629_12908/1-109   NCUACCGCCAGAGGUU-AGCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGGCCGA--GAGCUA-GUUGGA--CUGAGGU-UUAAGGGAGCCUACA-GUG-AACGUUCUGGCGAAGGAG
+URS0000D6A348_12908/1-109   ACUACCGCCAGAGGUU-AGCGGUCGCGAAG-GUU--GGGG------AGC-CU--GAUGACCGGCCGA--GAGCUA-GUUGGA--CUGAGGU-UUAAGGGAGCCUACA-GUG-AACGUUCUGGCGAAGGAG
+URS0000D68C27_12908/1-109   ACUACCGCCAGAGGUU-AGCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUAACCGGCCGA--GAGCUA-GUUG-GA-CUGAGGU-UUAAGGGAGCCUACAGUG--AACGUUCUGGCGAAGGAG
+URS0000D6C26B_12908/1-109   ACUACCGCCAGAGGUU-AGCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGGCCGA--GAGCUA-GUUG-GA-CUGAGGU-UUAAGGGAGCCUACAGUG--AACGUUCUGGCGAAGGAG
+URS0000D6C26B_435830/1-109  ACUACCGCCAGAGGUU-AGCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGGCCGA--GAGCUA-GUUG-GA-CUGAGGU-UUAAGGGAGCCUACAGUG--AACGUUCUGGCGAAGGAG
+URS0000D6B553_12908/1-109   AUCGCCGCUGGACGGA-ACGGGUCGCGAGG-GAC--GGGC------UUC-CC--CGCUGGUGAUCU-G--GCCGA-GAGC-CA-CCAGGGU-UGCAGGGACCCCUG-AUGGGCUCGCUCCGGCGAGGGAG
+URS0000D6B6A6_12908/1-109   AUCGCCGCUGGACGGA-ACGGGUCGCGAGG-GAC--GGGC------UUC-CC--CGCUGGUGAUCC-G--GCCGA-GAGC-CA-CCAGGGU-UGCAGGGACCCCUG-AUGGACUCGCUCCGGCGAGGGAG
+URS0000D671CA_12908/1-109   AUCGCCGCUGGACGGA-ACGGGUCGCGAGG-GA--CGGGCU------UC-CC--CGCUGGUGAUCC-G-G-CCGA-GAGC-CA-CCAGGGU-UGCAGGGACCCCUG-AUGGGCUCGCUCCGGCGAGGGAG
+URS0000D66063_12908/1-109   AUCGCCGCUGGACGGA-ACGGGUCGCGAGG-GA--CGGGCU------UC-CC--CGCGGGUGAUCC-G-G-CCGA-GAGC-CA-CCAGGGU-UGCAGGGACCCCUG-AUGGACUCGCUCCGGCGAGGGAG
+URS0000D6B7C0_12908/1-108   ACUGCCGUCGGACGGU-ACGGGCCGCAUAG-GGA--CGAC------UCC-CU--AGCGACUGGCCC-G--GCCGA-GAUG-CG-UCGGGGU-CGCAGGGAGCCCCGA-CAA-CUCGCUCCGGCGAAGGAG
+URS0000D68160_12908/1-107   AUCGCCGCCGGACGGC-GCGGGCCGCUAAGGGA---CGAU-------UCCCU---GUGACUGGCCC-G--GCCGA-GAAG-CG-ACGGGGU-CGCAGGGAGCCCCG-GCAA-UUCGCUCCGGCGAAGGAG
+URS0000D6C536_12908/1-109   AUUGCCGCCGGACGGG-AGCGGUCCUGAGG-GUU--GGGG------AGC-CC--GAUGACGGAUCG-U-GACUGA-GAGCCGG-UUCGGGU-UCACGGGAGCCCGG-GCC--CUCGCUCCGGUGAAGAAG
+URS0000D66046_12908/1-109   AUUGCCGCCGGACGGG-AGCGGUCCUGAGG-GUU--GGGG------AGC-CC--GAUGACGGAUCG-UGA-CUGA-GAGCUGG-UUCGGGU-UCACGGGAGCCCGG-GCC--CUCGCUCCGGCGAAGAAG
+URS0000D65B28_12908/1-109   AUUGCCGCCGGACGGG-AGCGGUCCUGAGG-GUU--GGGG------AGC-CC--GAUGACGGAUCG-UGA-CUGA-GAGCCGG-UUCGGGU-UCACGGGAGCCCGG-GCC--CUCGCUCCGGCGAAGGAG
+URS0000D6B699_12908/1-109   AUUGCCGCCGGACGGG-AGCGGUCUUGAGG-GUU--GGGG------AGC-CC--GAUGACGGAUCG-UGA-CUGA-GAGCCGG-UUCGGGU-UCACGGGAGCCCGG-GCC--CUCGCUCCGGCGAAGAAG
+URS0000D69CEC_12908/1-109   AUUGCCGCCGGACGGG-AGCGGUCCUGAGG-GUU--GGGG------AGC-CC--GAUGACGGAUCG-UGA-CUGA-GAGCCGG-UUCGGGU-UCACGGGAGCCCGG-GCC--CUCGCUCCGGCGAAGAAG
+URS0000D682E0_12908/1-109   CUCGCCGCUGGACGGA-AGCGGUCCCGAGG-GUU--GGGG------AGC-CC--GAUGACGGACCGCCGA--CGA-GAGCCG-GCUCGGGU-CUAAGGGAGCCCGGGU-C--CUCGCUCCGGCGAAGAAG
+URS0000D69513_12908/1-109   AUUGCCGUCGGACGGG-GCGGGUCCUGAGG-GUU--GGGG------AAC-CC--GGUGAGGGAUUC-GCG-UCGA-GCGC-UG-CUGGGGU-CCAAGGGAGCCCUG-GUGG-UGCGUUCCGGCGAAGGAG
+URS0000D6D135_12908/1-109   GUCGCCGUCGGACGGG-GCGGGUCCUGAGG-GUU--GGGG------AAC-CC--GGUGAGGGAUUC-GCG-UCGA-GCGC-UG-CUGGGGU-CCAAGGGAGCCCUG-GUGG-UGCGUUCCGGCGAAGGAG
+URS0000D6C20F_12908/1-109   GUCGCCGUCGGACGGG-GCGGGUCCUGAGG-GUU--GGGG------AAC-CC--GGUGAAGGAUUC-GCG-UCGA-GCGC-UG-CUGGGGU-CCAAGGGAGCCCUG-GUGG-UGCGUUCCGGCGAAGGAG
+URS0000D68E93_12908/1-106   ---GCCGUCGGACGGG-GCGGGUCCUGAGG-GUU--GGGG------AAC-CC--GGUGAAGGAUUC-G-UGUCGA-GCGCU-G-CUGGGGU-CCAAGGGAGCCCUG-GU-GGUGCGUUCCGGCGAAGGAG
+URS0000D6AA70_12908/1-109   GGUGCCGUCGGACGGA-GCGGGUCAUGAGG-GUU--GGGG------AAC-CC--GAUGAGGGGCUC-GUCUUCGA-GGUC-UG--CGGGGU-CUUAGGGAGCCCUGG-CAG-GCCGUUCCGGCGAAGGGG
+URS0000D669F6_12908/1-109   GGUGCCGUCGGACGGA-GCGGGUCAUGAGG-GUU--GGGG------AAC-CC--GAUGAGGGGCUC-GUCUUCGA-GGUC-UG--CGGGGU-CUUAGGGAGCCCUG-GCAG-GCUGUUCCGGCGAAGGGG
+URS0000D683F7_12908/1-110   GCUGCCGCCGGACGGG-GCGGGUCAUGAGG-GUU--GGGG------AAC-CC--GGUGAGGGGCCU-GCUUGCGA-GAGC-CG-CCAGGGU-CUAAGGGAGCCCUG-GUGG-GUCGUUUCGGCGAAGGGG
+URS0000D6C6B9_12908/1-109   GGUGCCGCCGGGCGGU-GCGGGUCUUGAGG-GUU--GGGG------AAC-CC--GGUGACGGGCCU-G-UGCCGA-GGUC-UG-UCGGGGU-CCAAGGGAGCCCUG-GCGG-GUCGUUUCGGCGAAGGGG
+URS0000D69236_12908/1-110   GUUGCCGCCGGACGGG-AUGGGUCAUGAGG-GUU--GGGG------AAC-CU--GUUGAGGGGCUU-GUUUCCGA-GAGG-UG-CUUGGGU-CCAAGGGAGCCCGG-GUGG-UUCGUUUCGGCGAAGGAG
+URS0000D6893C_12908/1-110   GUUGCCGCCGGACGGG-AUGGGUCAUGAGG-GUU--GGGG------AAC-CU--GUUGAUGGGCUU-GUUUCCGA-GAGG-UG-CUUGGGU-CCAAGGGAGCCCGG-GUGG-UUCGUUUCGGCGAAGGAG
+URS0000D6BDB3_12908/1-110   UGUGCCGCCGGACGGG-AUGGGUCAUGAGG-GUU--GGGG------AAC-CU--GUUGAUGGGCUU-GUUUCCGA-GAGG-UG-CUUGGGU-CCAAGGGAGCCCGG-GUGG-UUCGUUUCGGCGAAGGAG
+URS0000D6662E_12908/1-110   UUUGCCGCCGGACGGG-AUGGGUCAUGAGG-GUU--GGGG------AAC-CU--GUUGAUGGGCUU-GUUUCCGA-GAGG-UG-CUUGGGU-CCAAGGGAGCCCGG-GUGG-UUCGUUUCGGCGAAGGAG
+URS0000D6BFBB_12908/1-109   GCCACCGCCGAACGAU-GCGCGACGCGAGG-GUU--GGGG------AAC-CC--GGUGACCCGAGC-G-CAUCGA-GACU-GG-CAAGGGU-CCUAGGGAGCCC-GCGUCG-GUCGUUUCGACGAAGGAG
+URS0000D6AC55_12908/1-110   CUCACCGCCGGGCGGG-GGACGCCACCAGG-GUU--GGGG------AGC-CC--GAUGACCGGCCUAU-CUCCGA-GGCG-GC-CAUGGGU-ACAAGGGAGCCCGC-GGCC-GUCGUCCCGGCGAAGGAG
+URS0000D6AD3B_12908/1-110   CUCACCGCCGGGCGGGGAU--GCCGCCAGG-GUU--GGGG------AGC-CC--GAUGACCGGUCCCAUCUCCGA-GGCG-GC-CAUGGGU-ACAAGGGAGCCCGC-GGCC-GUCGUCCCGGCGAAGGAG
+URS0000D679CC_12908/1-111   CUCACCGCCGGGCGGG-GGACGCCGACAGG-GUU--GGGG------AGC-CC--GAUGACCGGUCCCAUCUCCGA-GGCG-GC-CACGGGU-CCAAGGGAGUCCGC-GGCC-GCCGUCCCGGCGAAGGAG
+URS0000D6A336_12908/1-111   CUCACCGCCGGGCGGG-GGACGCCGCCAGG-GUU--GGGG------AGC-CC--GAUGACCGGUCUCAUCUCCGA-GGCG-GC-CACGGGU-CCAAGGGAGCCCGC-GGUC-GCCGUCCCGGCGAAGGAG
+URS0000D65959_12908/1-111   CUCACCGCCGGGCGGG-GGACGCCGCCAGG-GUU--GGGG------AGC-CC--GAUGACCGGUCCCAUCUCCGA-GGCG-GC-CACGGGU-CCAAGGGAGCCCGC-GGCC-GCCGUCCCGGCGAAGGAG
+URS0000D68A87_12908/1-111   CUCACCGCCGGGCGGG-GGACGCCGCCAGG-GUU--GGGG------AGC-CC--GAUGACCGGUCCCAUCUCCGA-GGCG-GC-CACGGGU-CCAAGGGAGCCCGC-GGUC-GCCGUCCCGGCGAAGGAG
+URS0000D68846_12908/1-111   AGCACCGUUGGACAGG-AUCGGUCCCGAGG-GUU--GGGG------AGC-CC--GUUGAAAGAUCGCAUCUCUGA-GAUG-GC-GCUGGGU-CAUAGGGAGCCUAGA-ACC-GUCGUUCCGGCGAAGGAG
+URS0000D6C9D9_12908/1-111   AGCACCGUUGGACAGG-AUCGGUCCCGAGG-GUU--GGGG------AGC-CC--GUUGAAAGACCGCAUCUCUGA-GAUG-GC-GCUGGGU-CAUAGGGAGCCUAGA-ACC-GUCGUUCCGGCGAAGGAG
+URS0000D6BC1B_12908/1-111   UCAACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GACGACGGACUGCAUCUCUGA-GAUG-AC-ACCGGGU-CAUAGGGAGCCUGG-CGUG-AUCGUUUCGGCGAAGGAG
+URS0000D6C162_12908/1-111   UCAACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GACGACGGACUGCAUCUCUGA-GAUG-AC-ACCGGGU-CAUAGGGAGCCUGG-UGUG-AUCGUUUCGGCGAAGGAG
+URS0000D69753_12908/1-111   UCAACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACGGACUGCAUCUCUGA-GAUG-AC-ACCGGGU-CAUAGGGAGCCCGG-CGUG-AUCGUUUCGGCGAAGGAG
+URS0000D6B2DC_12908/1-111   UCAACCGCUGGACAGA-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACGGACUGCAUCUCUGA-GAUG-AC-ACCGGGU-CAUAGGGAGCCCGG-CGUG-AUCGUUUCGGCGAAGGAG
+URS0000D6C5EE_653386/1-111  UCAACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AAUGACGGACUGCAUCUCUGA-GAUG-AC-ACCGGGU-CAUAGGGAGCCCGGC-GUG-AUCGUUUCGGCGAAGGAG
+URS0000D68812_12908/1-111   AUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGCGACUCUGA-GAUG-GU-GUCGGGU-CAUAGGGAGCCCGGC-GUC-GCCGCUCCGGCGAAGGAG
+URS0000D65A3F_12908/1-111   AUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGAUCCUCUGA-GAUG-GG-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCUGGCGAAGGAG
+URS0000D6A9F8_706439/1-111  GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AAUGACGGAUCGAUCCUCUGA-GAUG-GG-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCUGGCGAAGGAG
+URS0000D6A259_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACGGAUCGAUCCUCUGA-GAUG-GG-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCUGGCGAAGGAG
+URS0000D69B37_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGAUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUUCGGCGAAGGAG
+URS0000D69D97_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUUCGGCGAAGGAG
+URS0000D693B7_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCGCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUUCGGCGAAGGAG
+URS0000D6A609_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUUGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCGUC--AUCGUUCCGGCGAAGGAG
+URS0000D6AB19_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCGUC--AUCGUUCCGGCGAAGGAG
+URS0000D6C3D1_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUUGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D660F5_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCGCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D6C822_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D6C822_562973/1-111  GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D693EA_944560/1-111  GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GG-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D693EA_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCUCUGA-GAUG-GG-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D6A75C_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGCUCCACUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D6B15E_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGCUCCUCUGA-GAUG-GA-GUCGGGU-CAUAGGGAGCCUGGCAUC--AUCGUUCCGGCGAAGGAG
+URS0000D67997_871541/1-111  GCCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGAUCCUCUGA-GAUG-GA-GCCGGGU-CAUAGGGAGCCUGAC-UUC-AUCGUUUCGGCGAAGGAG
+URS0000D68D5B_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--GAUGACAGAUCGAUCCUCUGA-GAUG-GA-GCCGGGU-CAUAGGGAGCCUGACUUC--AUCGUUUCGGCGAAGGAG
+URS0000D6C356_12908/1-111   GUCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGAUCCCCUGA-GAUG-AA-GUUGGGU-CAUAGGGAGCCUGACA-UC-AUCGUUUCGGCGAAGGAG
+URS0000D6D124_12908/1-111   GUCGCCGCCGGACAGG-AACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGAUCCCCUGA-GAUG-AA-GUUGGGU-CAUAGGGAGCCUGACA-UC-AUCGUUUCGGCGAAGGAG
+URS0000D69CCD_12908/1-111   AACACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUA-GC-ACCGGGU-CAUAGGGAGCCCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6A909_12908/1-111   GACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUA-GC-ACCGGGU-CAUAGGGAGCCCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D68122_12908/1-111   AAUACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCCCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6CE52_12908/1-111   GACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCCCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6AC60_12908/1-111   AACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCUCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6AC60_1115803/1-111 AACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCUCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6A180_12908/1-111   AACACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCUCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6988A_12908/1-111   AACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCCCGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D6A372_12908/1-111   AACACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGCGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCCUGG-GGCG-AUCGUUCUGGCGAAGGAG
+URS0000D67904_12908/1-111   AGUGCCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGAUCGCACUCCUGA-GAUG-GC-ACCGGGU-CAUAGGGAGCCCGG-GGUG-AUCGUUCUGGCGAAGGAG
+URS0000D6B0B4_12908/1-111   GGCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACGGUG--UCGGGU-CAUAGGGAGCCCGG--CGCAGUCGCUCUGGCGAAGGAG
+URS0000D6AE55_12908/1-111   GGCACCGCCGGACAGA-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACGGUG--UCGGGU-CAUAGGGAGCCUGG--CGCAGUCGCUCUGGCGAAGGAG
+URS0000D6AE55_762963/1-111  GGCACCGCCGGACAGA-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACGGUG--UCGGGU-CAUAGGGAGCCUGG--CGCAGUCGCUCUGGCGAAGGAG
+URS0000D6C5AA_12908/1-111   GGCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACG-GC-GUCAGGU-CAUAGGGAGCCUGG-CGCA-GUCGCUCUGGCGAAGGAG
+URS0000D671CD_12908/1-111   GGCACCGCUGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACG-GU-GUCGGGU-CAUAGGGAGCCUGG-CGCA-GUCGCUCUGGCGAAGGAG
+URS0000D6656F_12908/1-111   GGCACCGCCGGACAGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACG-GU-GUCGGGU-CAUAGGGAGCCUGG-CGCA-GUCGCUCUGGCGAAGGAG
+URS0000D694DA_12908/1-111   GGCACCGCCGGACGGG-GACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACAGGCCGCAUCUCUGA-GACA-GU-GUCGGGU-CAUAGGGAGCCCGG-CGCA-GUCGCUCUGGCGAAGGAG
+URS0000D6C554_12908/1-111   GGUACCGCUGGACGGG-AACGGUCCCGAGG-GUU--GGGG------AGC-CC--AGUGACGGAUCGCAUUUCUGA-GACG-GU-GUCGGGU-CAUAGGGAGCCUGGC-GUC-AUCGUUCCAGCGAAGGAG
+URS0000D6B820_12908/1-111   GGUACCGCUGGACGGG-AACGGUCCCGAGG-GUU--GGGG------AGC-CC--AGUGACGGAUCGCAUUUCUGA-GACG-GU-GUCGGGU-CAUAGGGAGCCCGGC-GUC-AUCGUUCCAGCGAAGGAG
+URS0000D69B45_12908/1-111   GUCACCGCCGGACAGG-AACGGUCUCGAGG-GUU--GGGG------AGC-CC--AGUGACGGAUCGCAUUUCUGA-GACG-GC-GUCAGGU-CAUAGGGAGCCUGG-CGUC-AUCGUUCCAGCGAAGGAG
+URS0000D6BD88_12908/1-109   CUUGCCGCCGGACGGA-ACGGGUCGCGAGG-GUU--GGGG------AAC-CC--GACGACCUACCCUG-A-CCGA-GCAC-UG-UACGGGU-CCAAGGGAGCCCGC-ACGG-AGCGUUCUGGCGAAGGAG
+URS0000D6853A_12908/1-109   CUUGCCGCCGGACGGA-ACGGGUCGCGAGG-GUU--GGGG------AAC-CC--GACGACCUACCCUG-A-CCGA-GCAC-UG-UACGGGU-CCAAGGGAGCCCGC-ACGG-AGCGUUCCGGCGAAGGAG
+URS0000D67F64_12908/1-109   ACUGCCGCCGAACGGU-GCGGGGCGUGAGG-GUU--GGGG------AAC-CC--CGCGACCGCUUC-G-GAUCGA-GAUC-GG-UGCGGGU-CUUAGGGAGCCCG--UCCUGGUCGCUUCGGUGAAGGAG
+URS0000D6C562_12908/1-111   GUUACCGCCGGGCGGG-GCGGACCGCGAGG-GUU--GGGG------AGC-CC--AUUGACCGGUUC-GUCGCCGA-GGUC-AG-GAUGGGU-CUUAGGGAGCCCAUCGCUG-ACCGUCCCGGCGAAGGAG
+URS0000D6C1B2_12908/1-111   GUUACCGCCGGGCGGG-GCGGACCGCGAGG-GUU--GGGG------AGC-CC--AUUGACCGGUUC-GUCGCCGA-GGUC-AG-GAUGGGU-CUUAGGGAGCCCGUCGCUG-ACCGUCCCGGCGAAGGAG
+URS0000D6CA8B_12908/1-111   GUUACCGCCGGGCGGG-GCGGACCGCGAGG-GUU--GGGG------AGC-CC--AUCGACCGGUUC-GUCGCCGA-GGUC-AG-GAUGGGU-CUUAGGGAGCCCGUCGCUG-ACCGUCCCGGCGAAGGAG
+URS0000D6A478_12908/1-111   GUUACCGCCGGGCGGG-GCGGACCGUGAGG-GUU--GGGG------AGC-CC--AUCGACCGGUUC-GUCGCCGA-GGUC-AG-GAUGGGU-CUUAGGGAGCCCGUCGCUG-ACCGUCCCGGCGAAGGAG
+URS0000D6A2C7_12908/1-109   AUCACCGCCGGGCGGA-ACGGAUCGGGAGG-GUU--GGGG------AAC-CC--GUUGAUCGAUCC-G-GGCCGA-GACU-GG-UGCAGGU-CUUAGGGAGCCUGC-UCCA-GGCGCUCCGGCGAAGGAG
+URS0000D66525_12908/1-108   AUCACCACCGGACGGA-ACUGGUCGUGAGG-GUU--GGGG------AAC-CC--GCUGACCGGCCA-GGA-CCGA-GACG-UG-CGAGGGU-CCCAGGGAGCCC-AAGCA--GUCGCUCUGGCGAAGGAG
+URS0000D69CCE_12908/1-108   AUCACCACCGGACGGA-ACUGGUCGUGAGG-GUU--GGGG------AAC-CC--GCUGACCGGCCA-GGA-CCGA-GACA-UG-CGAGGGU-CCCAGGGAGCCC-AAGCA--GUCGCUCUGGCGAAGGAG
+URS0000D676C0_12908/1-108   AUCACCACCGGACGGA-ACUGGUCGUGAGG-GUU--GGGG------AAC-CU--GUUGACCGGCCA-GGA-CCGA-GACG-UG-CGAGGGU-CCCAGGGAGCCC-AAGCA--GUCGCUCUGGCGAAGGAG
+URS0000D6C96A_12908/1-108   AUCACCACCGGACGGA-ACUGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGACCGGCCA-GGA-CCGA-GACG-UG-CGAGGGU-CCCAGGGAGCCC-AAGCA--GUCGCUCUGGCGAAGGAG
+URS0000D66B9C_12908/1-108   AUCACCACCGGACGGA-ACUGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGACCGGCCA-GGA-CCGA-GACA-UG-CGAGGGU-CCCAGGGAGCCC-AAGCA--GUCGCUCUGGCGAAGGAG
+URS0000D69788_12908/1-109   AUCACCGCCGGACGGG-CGAGGUUGUGAGG-GUU--GGGG------AAC-CC--GGUGACCAGCUU-C-AUCCGA-GAU--GG-CUCGGGU-UUAAGGGAGCCCGGGACCG-AUCGCUCUGGCGAAGGAG
+URS0000D67125_12908/1-109   AUCACCGCUGGACGGA-CGAGGUUGUGAGG-GUU--GGGG------AAC-CC--GGUGACCAGCUU-C-AUCCGA-GAU--GG-CUCGGGU-UUAAGGGAGCCCGGGACCG-AUCGCUCCGGCGAAGGAG
+URS0000D6603D_525246/1-109  GUCACCGCCGGACGGA-ACAGGUCACGAGG-GUU--GGGG------AAC-CC--GAUGACCGGCCU-GGA-CCGA-GACG-GC-CACGAGU-ACUAGGGAGCUCGG-GGCA-GUCGCUUCGGUGAAGGAG
+URS0000D663EE_12908/1-111   UGUGCCGCCGGACGGA-GAGGGUCACGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCC-UCCUCCGA-GAUG-GC-C-CGGGGUCUAAGGGAGCCCGGG-GUCGAUCGCUCUGGCGAAGGAG
+URS0000D66FC7_12908/1-110   ACUGCCGUCGGACGGG-ACGGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGAGCGGUCC-GUCGCCGA-GGUC-GA-GGCGGGU-CUUAGGGAGCCCG--CUCCGAUCGCUCCGGCGAAGGAG
+URS0000D68641_12908/1-110   ACUGCCGUCGGACGGG-ACGGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGAGCGGUCC-GUCACCGA-GGUC-GA-GGCGGGU-CUUAGGGAGCCCG--CUCCGAUCGCUCCGGCGAAGGAG
+URS0000D6CCB9_12908/1-110   ACUGCCGUCGGACGGG-ACGGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGAUCGGUUC-GUCGCCGA-GGUC-GA-GGCGGGU-CUUAGGGAGCCCG--CUCCGAUCGCUCCGGCGAAGGAG
+URS0000D6B85C_12908/1-110   ACUGCCGUCGGACGGG-ACGGGUCGUGAGG-GUU--GGGG------AAC-CC--GUUGAUCGGUCC-GUCGCCGA-GGUC-GA-GGCGGGU-CUUAGGGAGCCCG--CUCCGAUCGCUCCGGCGAAGGAG
+URS0000D690FE_12908/1-110   ACUGCCGUCGGACGGG-ACGGGUCGUGAGG-GUU--GGGG------AAC-CC--GUCGAGCGGUCC-GUCGCCGA-GGUC-GA-GGCGGGU-CUUAGGGAGCCCGCU-CCG-AUCGCUCCGGCGAAGGAG
+URS0000D68270_12908/1-110   GUCACCGCCGGACGGG-CGGGGCCGUGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCC-C-CUCCGA-GGUG-GC-UCGGGGU-UUAAGGGAGCCCCG-GGUCGAUCGUUCCGGCGAAGGAG
+URS0000D66A81_12908/1-110   GUCACCGCCGGACGGG-CGGGGCCGUGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCU-C-CUCCGA-GGUG-GC-UCGGGGU-UUAAGGGAGCUCCG-GGUCGAUCGUUCCGGCGAAGGAG
+URS0000D68F5B_12908/1-110   GUCACCGCCGGACGGG-CGGGGCCGUGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCC-C-CUCCGA-GGUG-GC-UCGGGGU-UUAAGGGAGCUCCG-GGUCGAUCGUUCCGGCGAAGGAG
+URS0000D67823_12908/1-110   GUCACCGCCGGACGGG-CGGGGCCGUGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCU-C-CUCCGA-GGUG-GC-UCGGGGU-UUAAGGGAGCCCCG-GGUCGAUCGUUCCGGCGAAGGAG
+URS0000D689E8_12908/1-110   AUCACCGCCGGACGGACGGGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGCCCU-C-GUCCGA-GAUG-AC-CCAGGGU--CCAGGGAGCCCCG-GGCCGGUCGCUCCGGCGAAGGAG
+URS0000D676F7_12908/1-110   AUCACCGCCGGACGGACGGGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGCCCU-C-GUCCGA-GAUG-AC-CCAGGGU--CCAGGGAGCCCCG-GGCCGAUCGCUCCGGCGAAGGAG
+URS0000D672DB_12908/1-110   AUCACCGCCGGACGGACGGGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGCUCUU--GUCCGA-GAUG-AC-CCAGGGU--CCAGGGAGCCCCG-GGCCGAUCGCUCCGGCGAAGGAG
+URS0000D67003_12908/1-110   AUCACCGCCGGACGGACGGGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGCUCU-C-GUCCGA-GAUG-AC-CCAGGGU--CCAGGGAGCCCCG-GGCCGAUCGCUCCGGCGAAGGAG
+URS0000D6BC48_12908/1-110   GGUACCGCCGGAUGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GACGACUGGCAG-GCAUCCGA-GUUC-GG-AACGGGU-UUUAGGGAGCCCGG-ACUG-GACGAUCCGGCGAAGGAG
+URS0000D66CBF_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGGA-CCG-GACGUUCUGGUGAAGGAG
+URS0000D66CBF_706439/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGGA-CCG-GACGUUCUGGUGAAGGAG
+URS0000D66CBF_871541/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGGA-CCG-GACGUUCUGGUGAAGGAG
+URS0000D66CBF_562973/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGGA-CCG-GACGUUCUGGUGAAGGAG
+URS0000D66CBF_944560/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGGA-CCG-GACGUUCUGGUGAAGGAG
+URS0000D66138_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGG-CUUAGGGAGCCCGG-ACCG-GACGUUCUGGUGAAGGAG
+URS0000D69956_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUAUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-GACGUUCUGGUGAAGGAG
+URS0000D6CA66_653386/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GUUGACUGACAG-GUAUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACUG-GACGUUCUGGCGAAGGAG
+URS0000D6C08E_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GACGACUGGCAG-GUAUCCGA-GUUC-GG-AACGGGU-UUUAGGGAGCCCGG-ACCG-GACGUUCUGGCGAAGGAG
+URS0000D6A9B4_12908/1-110   ACUACCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-GACGUUCUGGCGAAGGAG
+URS0000D67B38_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUCU-GG-AACGGGU-CUUAGGGAGCCCGG-ACCAGAGCGCUCUGGCGAAGGAG
+URS0000D6B7D5_12908/1-110   ACUACCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-GCCG-AGCGCUCUGGCGAAGGAG
+URS0000D69DF4_12908/1-110   ACUACCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-AGCGCUCUGGCGAAGGAG
+URS0000D69DF4_1115803/1-110 ACUACCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-AGCGCUCUGGCGAAGGAG
+URS0000D65E09_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUCCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-AGCGCUCUGGCGAAGGAG
+URS0000D6904B_762963/1-110  ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUUCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-AGCGCUCUGGCGAAGGAG
+URS0000D6904B_12908/1-110   ACUGCCGCCGGACGGA-ACCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGACUGGCAG-GUCUUCGA-GUUC-GG-AACGGGU-CUUAGGGAGCCCGG-ACCG-AGCGCUCUGGCGAAGGAG
+URS0000D67EF2_12908/1-110   ACUGCCGCUGGACGGA-AUCGGUCACGAGG-GUU--GGGG------AGC-CC--AAUGACUGGCAG-GUAUCCGA-GUUC-GG-AACGGGU-UUUAGGGAGCCCGG-ACCG-GGCGCUCCGGCGAAGGAG
+URS0000D68E06_12908/1-110   ACUGCCGCUGGACGGA-AUCGGUCACGAGG-GUU--GGGG------AGC-CC--GAUGAAUGGCAG-GUAUCCGA-GUUC-GG-AACGGGU-UUUAGGGAGCCCGG-ACCG-GGCGCUCCGGCGAAGGAG
+URS0000D66278_12908/1-109   GUCACCGCCGGACGGG-AGUGGUCACGAGG-GUU--GGGG------AAC-CC--GAUGACCGGCCA-CGA-CCGA-GGUG-AC-CAAGGGU-CUAAGGGAGCCCAA-GGGC-GCCGCUUCGGCGAAGGAG
+URS0000D6A9DB_12908/1-109   GUCACCGCCGGACGGG-AGUGGUCGUGAGG-GUU--GGGG------AAC-CC--GAUGACCGGCUA-CGA-CCGA-GGUG-AC-CAAGGGU-CUAAGGGAGCCC-GAGGGC-GCCGCUUCGGCGAAGGAG
+URS0000D664F2_12908/1-109   GUCACCGCCGGGCGGG-AGCGGUCGUGAGG-GUU--GGGG------AAC-CC--GAUGACCGGGCG-CUUCCCGA-GGCG-AC-CGAGGGU-CUAAGGGAGCCC-G-AGGC-GCCGCUUCGGCGAAGGAG
+URS0000D683BD_12908/1-109   GUCACCGCCGGACGGG-AGCGGUCGUGAGG-GUU--GGGG------AAC-CC--GAUGAUCGGGCG-CUUUCCGA-GGCG-AC-CGAGGGU-CUAAGGGAGCCC-G-AGGC-GCCGCUUCGGCGAAGGAG
+URS0000D68692_12908/1-109   GUCACCGCCGGACGGG-AGCGGUCGUGAGG-GUU--GGGG------AAC-CU--GAUGACCGGGCG-CUUUCCGA-GGCG-AC-CGAGGGU-CUAAGGGAGCCC-G-AGGC-GCCGCUUCGGCGAAGGAG
+URS0000D6B9BE_12908/1-109   GUCACCGCCGGACGGG-AGCGGUCGUGAGG-GUU--GGGG------AAC-CC--GAUGACCGGGCG-CUUUCCGA-GGCG-AC-CGAGGGU-CUAAGGGAGCCC-G-AGGC-GCCGCUUCGGCGAAGGAG
+URS0000D6A655_12908/1-109   GUCGCCGUCGGACGGA-GGCGGUCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCCG-CAG-UCGA-GGCG-AC-CAAGGGU-CUAAGGGAGCCC-GUGGAC-GCCGCUCCGGCGAAGGAG
+URS0000D66DA1_12908/1-109   CUCACCGUCGGACGGA-CGCGGUCGUGAGG-GUU--GGGG------AAC-CC--GGUGACCGGCCG-UAG-CCGA-GGCG-AC-CAAGGGU-CUAAGGGAGCCC-GCGGAC-GCCGCUCCGGCGAAGGAG
+URS0000D693A2_12908/1-111   CUUGCCGCCGGACGGG-AGGGGUCGUGAGG-GUU--GGGG------AGC-CC--AAUGACCGAGUC-CUUGCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGUCGGUCGCUCUGGCGAAGGAG
+URS0000D6B684_12908/1-111   GUUACCGCCGGACGGG-AGGGGUCGUGAGG-GUU--GGGG------AGC-CC--AAUGACCGAGUC-CUUGCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGUCGGUCGCUCUGGCGAAGGAG
+URS0000D6612E_12908/1-112   GUUACCGCCGGACGGG-AGGACUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGAGCC-CUUUCCGA-GACG-GC-CGAGGGUCUAUAGGGAGCCC-GAGGUCGGUCGCUCUGGCGAAGGAG
+URS0000D6C846_12908/1-111   GUUACCGCCGGACGGG-AGGACUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGAGCC-CUUUCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGUCGGUCGCUCUGGCGAAGGAG
+URS0000D68C5D_12908/1-111   GUUACCGCCGGACGGG-AGGGCGCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGAGCC-CUUUCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGUCGGUCGCUCUGGCGAAGGAG
+URS0000D695FD_12908/1-111   GUUGCCGCCGGACGGG-GGGACUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAGUU-CUUGCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGCUGGUCGCUCUGGCGAAGGAG
+URS0000D68EE1_12908/1-111   GUUGCCGCCGGACGGG-AGGACUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAGUU-CUUGCCGA-GACG-GC-CGAGGGU-CUUAGGGAGCCC-GAGGCUGGUCGCUCUGGCGAAGGAG
+URS0000D6ADB3_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GACGACCGAUCG-GAUUUCGA-GG-C-CG-CUCGGGUUGAUAGGGAGCCCGGCACGGA-CCGCUCUGGCGAAGGAG
+URS0000D6AAA7_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGUGAGG-GUU--GGGG------AGC-CC--GACGACCGAUCG-GAUUUCGA-GG-C-CG-CUCGGGUUGAUAGGGAGCCCGGCACGGA-CCGCUCUGGCGAAGGAG
+URS0000D6B49D_12908/1-112   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC-UUCGGGUUGAUAGGGAGCCCGA-CGCGAGUCGUUCUGGCGAAGGAG
+URS0000D6B49D_653386/1-112  ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC-UUCGGGUUGAUAGGGAGCCCGA-CGCGAGUCGUUCUGGCGAAGGAG
+URS0000D66FF1_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGGGUUGAUAGGGAGCCCGG-CGCGAGUCGCUCUGGCGAAGGAG
+URS0000D6A656_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGGGUUGAUAGGGAGCCCGA-CGCGAGUCGCUCUGGCGAAGGAG
+URS0000D68E0B_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGGGUUGAUAGGGAGCCCGG-CGCGAGUCGCUCUGGCGAAGGAG
+URS0000D66205_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--UCGGGUUGAUAGGGAGCCCGA-CGCGAACCGCUCUGGCGAAGGAG
+URS0000D66992_12908/1-111   ACCGCCGCCGGACGGA-ACUAGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--UCGGGUUGAUAGGGAGCCCGA-CGCGAACCGCUCUGGCGAAGGAG
+URS0000D679D2_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--UCGGGUUGAUAGGGAGCCCGGC-GCGGACCGCUCUGGCGAAGGAG
+URS0000D678A7_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GACGACCGAUCG-GAUUUCGA-GGCC-GC--UCGGGUUGAUAGGGAGCCCGGC-GCGGACCGCUCUGGCGAAGGAG
+URS0000D6585F_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GACGACCGAUCG-GAUUUCGA-GACU-GC--UCGGGUUGAUAGGGAGCCCGGC-GCGGACCGCUCUGGCGAAGGAG
+URS0000D6877C_12908/1-111   ACUGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--GACGACCGAUCG-GAUUUCGA-GGCU-GC--UCGGGUUGAUAGGGAGCCCGGC-GCGGACCGCUCUGGCGAAGGAG
+URS0000D66D56_12908/1-111   ACCGCCGCCGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--CAUGACCGAUCG-GAUUUCGA-GGUC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAACCGCUCUGGCGAAGGAG
+URS0000D68E72_706439/1-111  ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGGGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D67DAA_871541/1-111  ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGACCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D67DAA_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGACCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D6B12A_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D68A27_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGCGAGCCGCUCUGGCGAAGGAG
+URS0000D68A27_562973/1-111  ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGCGAGCCGCUCUGGCGAAGGAG
+URS0000D6C40C_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D6C40C_944560/1-111  ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUCGG-CGUGAGCCGCUCUGGCGAAGGAG
+URS0000D690BC_12908/1-111   ACCGCCGCCGGACGGA-ACUGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GAUUUCGA-GGCC-GC--CCGAGUUGAUAGGGAGCUUGG-CGCGAGCCGCUCUGGCGAAGGAG
+URS0000D6C104_12908/1-111   UCUACCGCUGGACGGA-UCCGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GCUUUCGA-GGUC-GC--CCGGGUUGAUAGGGAGCCCGA-CGUGAACCGCUCCAGCGAAGGAG
+URS0000D65B5F_12908/1-111   CCUGCCGCUGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GCUUUCGA-GGUC-GC--CCGGGUUGAUAGGGAGCCCGA-UGUGAACCGCUCUGGCGAAGGAG
+URS0000D6D223_12908/1-111   CCUGCCGCUGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GCUUUCGA-GGUC-GC--CCGGGUUGAUAGGGAGCCCGA-CGUGAACCGCUCCGGCGAAGGAG
+URS0000D6700B_12908/1-111   UCUGCCGCUGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GCUUUCGA-GGUC-GC--CCGGGUUGAUAGGGAGCCCGA-CGUGAACCGCUCUGGCGAAGGAG
+URS0000D6C1BF_12908/1-111   UCUGCCGCUGGACGGA-ACCGGUCGCGAGG-GUU--GGGG------AGC-CC--AAUGACCGAUCG-GCUUUCGA-GGUC-GC--CCGGGUUGAUAGGGAGCCCGA-CGUGAACCGCUCCGGCGAAGGAG
+URS0000D6A159_12908/1-112   ACCGCCGCCGGACGGAAACCGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGAUCG-GCUUUCGA-GGU--CA-CCCGAGUUGAUAGGGAACUCGGCAUG-AGCCGCUCUGGCGAAGGAG
+URS0000D69257_525246/1-110  GUCACCGCCGGACGGA-ACGGGUCGCGAGG-GUU--GGGG------AGC-CU--GACGACCGAUCC-GCCUCCGA-GACA-GC-CACAGGU-CUUAGGGAGCCCA-AGGCA-GUCGCUCCGGCGAAGGAG
+URS0000D67F39_525246/1-110  ACUGCCGCCGGACGGA-ACGGGUCGCGAGG-GUU--GGGG------AGC-CU--GAUGACCGACCC-GCCUCCGA-GACA-GC-CACGGGU-CUUAGGGAGCCCGAA-GCC-GUCGCUCCGGCGAGGGAG
+URS0000D692AF_12908/1-109   CCUGCCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCUG-GUGUCCGA-GACG-GA--UCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D68879_12908/1-109   CCUGCCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGCCUG-GUGUCCGA-GACG-GA--CCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D6C6F9_12908/1-109   CCUACCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCUG-GUGUCCGA-GACG-GA--CCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D69D14_12908/1-109   ACUGCCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCUG-GUGUCCGA-GACG-GA--CCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D665FC_12908/1-109   CCUGCCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCUG-GUGUCCGA-GACG-GA--CCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D665FC_888056/1-109  CCUGCCGCCGGACGGA-GCCGGCCGCGAGG-GUU--GGGG------AAC-CC--GACGACCGGCUG-GUGUCCGA-GACG-GA--CCGGGU-CUUAGGGAGCCCGGU-UCG-GUCGCUCCGGCGAAGGAG
+URS0000D6B3D1_12908/1-110   GCAGCCGCCGGACGGA-GCGGGCCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGGAUC-GUUGCCGA-GACG-GA-GUCGGGU-CUUAGGGAGCCCG--GCCCGGUCGCUCUGGCGAAGAAG
+URS0000D670FC_12908/1-110   GCAGCCGCCGGACGGA-GCGGGCCGCGAGG-GUU--GGGG------AAC-CC--GAUGAUCGGAUC-GCUGCCGA-GACG-GA-GUCGGGU-CUUAGGGAGCCCG--GCCCGGUCGCUCUGGCGAAGAAG
+URS0000D6B7BD_12908/1-110   GCAGCCGCCGGACGGA-GCGGGCCGCGGGG-GUU--GGGG------AAC-CC--GAUGACCGGAUC-GCUGCCGA-GACG-GA-GUCGGGU-CUUAGGGAGCCCG--GCCCGGUCGCUCUGGCGAAGAAG
+URS0000D66797_12908/1-110   GCAGCCGCCGGACGGA-GCGGGCCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGGAUC-GCUGCCGA-GACG-GA-GUCGGGU-CUUAGGGAGCCCG--GCCCGGUCGCUCUGGCGAAGAAG
+URS0000D67ACA_12908/1-118   GCAGCCGCCGGACGGG-GCGGGCCGCGAGGGUUG--GGGAGCCCGAUGACCC--GAUGACCGGUUC-GCCGCCGA-GAUG-GG-ACCGGGU-UUUAGGGAGCCCG--GCCCGAUCGCUCUGGCGAAGAAG
+URS0000D69E9D_12908/1-110   GCAGCCGCCGGACGGG-GCGGGCCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGGUUC-GCCGCCGA-GAUG-GG-ACCGGGU-CUUAGGGAGCCCG--GCCCGAUCGCUCUGGCGAAGAAG
+URS0000D69C01_12908/1-110   GCAGCCGCCGGACGGG-GCGGGCCGCGAGG-GUU--GGGG------AGC-CC--GAUGACCGGUUC-GCCGCCGA-GAUG-GG-ACCGGGU-UUUAGGGAGCCCG--GCCCGAUCGCUCUGGCGAAGAAG
+URS0000D68A03_12908/1-111   ACCGCCGCCGGACGGA-GCGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGGGUC-GCUGCCGA-GACG-GC-UCCGGGU-CUUAGGGAGCCCGG-GGCCGGUCGUUCUGGCGAAGGAG
+URS0000D6C5DD_12908/1-111   ACCGCCGCCGGACGGA-GCGGGUCGCGAGG-GUU--GGGG------AAC-CU--GAUGACCGGGUC-GCUGCCGA-GACG-GU-UCCGGGU-CUUAGGGAGCCCGG-GGCCGGUCGUUCUGGCGAAGGAG
+URS0000D66F8E_12908/1-111   ACCGCCGCCGGACGGA-GCGGGUCGCGAGG-GUU--GGGG------AAC-CC--GAUGACCGGGUC-GCUGCCGA-GACG-GU-UCCGGGU-CUUAGGGAGCCCGG-GGCCGGUCGUUCUGGCGAAGGAG
+URS0000D6A8B5_12908/1-111   AUCGCCGCCGGACGGA-GCGGGCCGCGAGG-GUU--GGGG------AAC-CC--GGUGACCGGGUC-GUUUCCGA-GACG-GA-GCCGGGU-CUUAGGGAGCCCGGCA-CCGGUCGCUCUGGCGAAGGAG
+URS0000D69E5D_12908/1-110   GGCGCCGCCGGACGAA-GCGGGCCGCGAGG-GUU--GGGG------AAC-CC--GGUGACCGGGCC-GCUAUCGA-GGUC-GG-AACGGGU-CUUAGGGAGCCCGG-GCCG-GACGCUCCGGUGAAGGAG
+URS0000D6B7EF_12908/1-107   ACUGCCGCCGGACGGU-ACGGACCGUGAGG-GUU--GGGG------AAC-CC--GAGGACCGGCUC-G-UACCGA----GAGUCGUCGGGGUUGCAGGGAACCNGC--AUUUAGGGACCC--CGGAGGAG
+URS0000D65BF6_12908/1-114   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAGGAACAGGA------UUCCCC--ACAGACGGGCCC-G--ACCGA-GAAU-CG-CCAGGGUUUACAGGGAGCCCUG-ACGGAUUCGCUCCGGCGAAGGAG
+URS0000D6C7A1_12908/1-111   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CAGGA--------UUCCCCACAGACGGGCCC-G--ACCGA-GAAU-CG-CCAGGGUUUACAGGGAGCCCCG-GCGGAUUCGCUCAGGCGAAGGAG
+URS0000D6AC29_12908/1-111   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CAGGA--------UUCCCCACAGACGGGCCC-G--ACCGA-GAAU-CG-CCAGGGUUUACAGGGAGCCCCG-GCGGAUUCGCUCCGGCGAAGGAG
+URS0000D6AACE_12908/1-110   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CAGGA--------UUCCCCACGGACAGGCCC-G--ACCGA-GAAU-CG--CAGGGUUUACAGGGAGCCCUGA-CGGAUUCGCUCUGGCGAAGGAG
+URS0000D69D3A_12908/1-110   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CCGGA--------UUCCCCACGGACAGGCCC-G--ACCGA-GAAU-CG--CAGGGUUUACAGGGACCCCUGA-CGGAUUCGCUCCGGCGAAGGAG
+URS0000D69DD9_12908/1-110   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CAGGA--------UUCCCCACGGAUAGGCCC-G--ACCGA-GAAU-CG--CAGGGUUUACAGGGACCCCUGA-CGGAUUCGCUCCGGCGAAGGAG
+URS0000D68277_12908/1-110   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAA---CAGGA--------UUCCCCACGGAUAGGCCC-G--ACCGA-GAAU-CG--CAGGGUUUACAGGGAGCCCUGA-CGGAUUCGCUCCGGCGAAGGAG
+URS0000D6B00B_12908/1-110   ACUGCCGCCGGACGGU-GCGGGUCGUGAGGAACC-----G------GAUUCCCCACGGACAGGCCC-G--ACCGA-GAAU-CG--CAGGGUUUACAGGGAGCCCUG-ACGGAUUCGCUCCGGCGAAGGAG
+#=GC SS_cons                :::::(((((((<<<<.-<<<<<<<---<<.<<<..____......>>>.>>..------>>>>>>.>-->>>>,.<<<<.<<.--<<<<<.________>>>>>-.->>>.>>>,,)))))))::::::
+#=GC RF                     auuaCCGCcGGaCGgc.accggcCgcGAGG.Gcu..GGGG......agC.CC..gauGAccGgccg.guugcCGA.Ggcc.gg.aucGgGc.cuuAGGGAgCcCgg.accg.gcCGuuCCgGCGAAGGAG
+//

raw_data/life/L017/0013-RF03167.stockholm ADDED Viewed

	@@ -0,0 +1,103 @@

+# STOCKHOLM 1.0
+#=GF ID c-di-GMP-I-GGC
+#=GF AC RF03167
+#=GF DE c-di-GMP-I-GGC riboswitch aptamer
+#=GF AU Ontiveros-Palacios N; 0000-0001-8457-4455
+#=GF GA 59.0
+#=GF NC 58.9
+#=GF TC 59.0
+#=GF SE Published; PMID:28265071
+#=GF SS Published; PMID:28265071
+#=GF TP Cis-reg; riboswitch;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
+#=GF CL CL00126
+#=GF DR GO; 0035438; cyclic-di-GMP binding;
+#=GF DR SO; 0000035; riboswitch;
+#=GF RN [1]
+#=GF RM 28265071
+#=GF RT Bioinformatic analysis of riboswitch structures uncovers variant classes
+#=GF RT with altered ligand specificity.
+#=GF RA Weinberg Z, Nelson JW, Lunse CE, Sherlock ME, Breaker RR
+#=GF RL Proc Natl Acad Sci U S A. 2017;114:E2077.
+#=GF RN [2]
+#=GF RM 19898478
+#=GF RT Recognition of the bacterial second messenger cyclic diguanylate by its
+#=GF RT cognate riboswitch.
+#=GF RA Kulshina N, Baird NJ, Ferre-D'Amare AR
+#=GF RL Nat Struct Mol Biol. 2009;16:1212-1217.
+#=GF RN [3]
+#=GF RM 22148472
+#=GF RT Structural and biochemical characterization of linear dinucleotide
+#=GF RT analogues bound to the c-di-GMP-I aptamer.
+#=GF RA Smith KD, Lipchock SV, Strobel SA
+#=GF RL Biochemistry. 2012;51:425-432.
+#=GF RN [4]
+#=GF RM 20690679
+#=GF RT Structural and biochemical determinants of ligand binding by the c-di-GMP
+#=GF RT riboswitch .
+#=GF RA Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA
+#=GF RL Biochemistry. 2010;49:7351-7359.
+#=GF RN [5]
+#=GF RM 19898477
+#=GF RT Structural basis of ligand binding by a c-di-GMP riboswitch.
+#=GF RA Smith KD, Lipchock SV, Ames TD, Wang J, Breaker RR, Strobel SA
+#=GF RL Nat Struct Mol Biol. 2009;16:1218-1223.
+#=GF CC c-di-MP-I-GGC is a variant of c-di-GMPI riboswitch RF01051, that includes
+#=GF CC CORESEQ GGC. The structure of c-di-MP-I-GGC riboswitch has been reported
+#=GF CC in PDB: 3IRW, 3MXH, 3UCU, 3UCZ, 3IWN [2, 3, 4, 5].
+#=GF WK Cyclic_di-GMP-I_riboswitch
+#=GF SQ 40
+URS0000D66F14_12908/1-152                 ---CACGACAAAGGCAAAUCCGUCGAAAGA-CG-GAGACGCGC--AGCCC-U-UG-----------ACGCGUCGGCGUUGCGCUGAUGCGUCUGGUACUCUAGAUACUGCAUAUCUGCUCGCUCGCACUCUCCACAUGACGCAUUGGGAUGCCCAA-----------AGCAA-AGCUGCUGUU-U-
+URS0000D670CA_12908/1-90                  ---GGUUCAGUGGGCGCACUCAUCGAAAGA-UG-AGGGCGCGA--AGCCG-A-AUGUCCUCCGGGUUGGACA------------------------------------------------------------------------------------ACCCAAGG-ACAGCUUAGGUUGCCACC-C-
+URS0000D6A7FB_12908/1-138                 ---UUCGAUAAAGCCGAACCCAUCGAAAGA-UG-GGGACGGGA--AACCA-C-AAGUUUCAGAUAGUUUCGUUGAUUCAAGCUCCUAGUUUUUUUGGCGCUUCCUUAAGAUCUUGAUUCUCUACU------------------------------------AAACAGUAUUG-AGCUGCAGCG-C-
+URS0000D66689_12908/1-76                  ---GUCCGAAAGGGCAGACUGUCGGCGACG-GC-AGGACGCGA--AGCCU-C-CGGGC------UCGCAA--------------------------------------------------------------------------------------GA-----G-CUAGCGG-GGCCGCCAGG-A-
+URS0000D67EE2_12908/1-83                  ---AAUAAAAAAGGUACAUCUGUCGAAAGU-UU-GGGGCGCGA--AGCCG-C-GGAUU--------UAAUACGACAGCUGC----------------------------------------------------------------------------------G-AUGAGCG-GGCUACCGUG-G-
+URS0000D69D4A_12908/1-80                  ---UCUGCCAGAGGCACACUCGUCGCCAGG-CG-AGGGCGCGA--AGCUA-C-CCGUC----C---CGAUCGUGAC-----------------------------------------------------------------------------------G---G-ACAGUGG-GGUUGCCGCG-G-
+URS0000D6955D_12908/1-88                  ---GUUGAAAAAGGUACACUAUCCCAAAGG-GU-AGGCCGCGA--AGUUU-U-GGGUCUAAAUCACUUUUA-------------------------------------------------------------------------------------GUGACAUG-AUUGCCA-AGCUGCCGAU-U-
+URS0000D68578_12908/1-91                  ---UUGCUGAAGGACAAACCUUCCGAAAGG-UU-GGGACGCGA--AGCUU-C-CGAUCUAAGUCCGUUUUAAG-----------------------------------------------------------------------------------CGGAUAAG-AUAACGGGAGUUACUACG-C-
+URS0000D6C268_12908/1-85                  ---AUAGCCUUCGGUAAACCCUCUGAAAGGAGG-GGGGCACGA--AGCCA-U-GGGUCUAAAGU--AUUCA---------------------------------------------------------------------------------------GCUAUG-AUCGCCG-GGCUGCAGCA-A-
+URS0000D6C9B1_12908/1-89                  ---ACCGAAAAAGG-AAACAACCCGAAAGG-GU-UGGACGCGA--AGCAA-C-UGACCUAAGUCCGGAUUUUA-----------------------------------------------------------------------------------AGGAUACG-GUAGCAG-GGCUGCCGGA-C-
+URS0000D65E51_12908/1-76                  ---AAUAUUCUCGGCAAAACAGUCGAAAGG-CU-GUGACGCGA--AGCUA-CAGGGCCUGUA----AA---------------------------------------------------------------------------------------------AUG-GCAGCC--AGCUGCUUCU-C-
+URS0000D6B4D3_1262879/1-76                ---CGAAUUAUGGGCAGAUCAGUCGAGAGU-CU-GAGACGCGA--AGCUA-GAGCGCC--------UGUAACAU-----------------------------------------------------------------------------------------G-GCAGUA--AGCCGCUACG-U-
+URS0000D6C163_12908/1-89                  ---CUCAAAAAUGGCAAACCCAGCGAAAGC-UG-GGGCUGCGA--AGCUG-A-UGAUCUAAGGUGUCUUAUG------------------------------------------------------------------------------------GCACUAUG-AUGGUCU-GGCUGCUAAA-A-
+URS0000D69746_12908/1-92                  ---UGACGAAACGCCACACCCGGAGCAAUC-CG-GGGCCGGGA--AGCUA-C-GGGCUC---CACCACGGGCUUUCAAUCU---------------------------------------------------------------------------GGUG---G-GCCGCCG-AGCCGCCGAA-C-
+URS0000D6BB36_12908/1-79                  ---UUUUGUUGUGCCAAACUUGCUGUGAAG-CA-AGGACGGGA--AGCUA-U-GGGUC----UUA-GAUAA--------------------------------------------------------------------------------------UAA---G-AUUGCCA-GGUUGCCAAA-A-
+URS0000D693CF_12908/1-89                  ---CCCGACCAAGGCACACCGCUCGAAAGG-GC-GGCUCGCGA--AGCCA-C-GGGCCUUCCACCGCAACCG------------------------------------------------------------------------------------CGGUCACG-GCAGCCG-GGCCACCGCA-G-
+URS0000D66693_12908/1-91                  ---GCCGAUAAAGGCUAACCUCUCGAAAGA-GA-GGAGAGCGCAAAGCCA-C-GGGUCUAAGGCUCCGAUUU------------------------------------------------------------------------------------GAGCUAUG-GCUACCG-GGUUGCCGAA-G-
+URS0000D6B29D_12908/1-77                  ---UGCGACAAAGGCAACCCCGUCGCAAGA-UG-GGUGAGCGCAAAGCCA-C-GGGCC--------UCUAAGA------------------------------------------------------------------------------------------G-GCAGCCG-GGAUACCGAA-C-
+URS0000D6B429_12908/1-77                  ---UGCGACAAAGGCAACCCCGCCGCAAGG-CG-GGUGAGCGCAAAGCCA-C-GGGCC--------UCAAAGA------------------------------------------------------------------------------------------G-GCAGCCG-GGCUACCGAA-C-
+URS0000D6571B_12908/1-77                  ---UGCGACAAAGGCAACCCCGCCGCGAGG-CG-GGUGAGCGCAAAGCCA-C-GGGCC--------UCAAAGA------------------------------------------------------------------------------------------G-GCAGCCG-GGUUACCGAA-C-
+URS0000D667CA_12908/1-88                  ---CCUCGAAAUGGCAAACCCGGCGAAAGC-CG-GGGACGCGA--AGCCA-C-GGUCCCUCACUCUACUUG-------------------------------------------------------------------------------------AGAGACGG-GAAGCCG-AGCUACCGAA-A-
+URS0000D6C0F5_12908/1-78                  ---UUUGCUAGAGCCAAAUCUUUUGUAAAGCAG-GGGAAGGGA--AACCA-C-AGGUC--------UUAAAUGAA----------------------------------------------------------------------------------------G-AUAGCUG-GGUUGCCAUA-A-
+URS0000D67D5C_12908/1-88                  ---ACCGCCCAGGGCAAACCCGGCGUGAGU-CG-GGGACGCGA--AGCCA-G-GGAUC----UUCGAGAAGGAAUGUU------------------------------------------------------------------------------CGAA---G-ACCGCCC-GGUUGCCGGA-G-
+URS0000D699CD_12908/1-73                  ---CAAGAUAAAGCCAAACCUGCCGUGAGA-CA-GGG-CGGGA--AGCAA-C-GGGUC--------UCAAUA-------------------------------------------------------------------------------------------G-AUAGCCG-AGUUGCCUCU-U-
+URS0000D6CE47_12908/1-74                  ---CAAGGUAAAGCCAAACUUGUCGUAAGG-CA-GGGACGGGA--AGCUA-C-GGGUC--------UCAACU-------------------------------------------------------------------------------------------G-AUAGCCG-AGCUACCUUG-G-
+URS0000D6858C_12908/1-76                  ---CGAGGAUAAGCCAAAUCUGCCGAAAGA-CA-UGGACGGGG--AAUUA-C-GGGUC--------UUAUCGGA-----------------------------------------------------------------------------------------G-AUAACUG-GAUUGCCUUA-A-
+URS0000D66165_12908/1-75                  ---CAAGAGAAAGCCAAACCUGCCGUAAGG-UA-GGGACGAGG--AAUCA-C-AGAUU--------UCUUUGA------------------------------------------------------------------------------------------A-AUAGCCG-AGUUGCCUUG-A-
+URS0000D67A64_12908/1-75                  ---CAAGAAAAAGCCAAACCUGCCGCAAGA-CA-GGGACGAGG--AAUCA-CAGGUUU--------CUUUGA-------------------------------------------------------------------------------------------A-AUAGCCG-AGUUGCCUUG-A-
+URS0000D6A3DC_12908/1-77                  ---AAAGAAAAAGCCAAACCUGCCGCAAGA-CA-GGGACGGGG--AAUUA-C-GGGUC--------UUAUAAAAA----------------------------------------------------------------------------------------U-AUUGCCG-GUUUGCCUUG-A-
+URS0000D674D6_12908/1-78                  ---CCCGACAAAGCCAAACCCUCCGAGAGA-AG-GGGGCGGGA--AGCGG-C-GGGCU----UUA-ACAA---------------------------------------------------------------------------------------UAA---G-AUGGCCG-AGCUGCCGAA-G-
+URS0000D6C2A1_12908/1-109                 ---AACGACAAAGCCAAACCCGUCGAGAGA-CG-GGAAAGGGA--AACUA-C-GGGUG----UUCGCAUCCUCGGCGACGUUCUAUCGCC----------------------------------------------------------ACGAAGGACGCAA--G-AUCGCCC-GGCUGCCGAA-G-
+URS0000D69DD4_12908/1-106                 ---AGCGAAAAGGGCAAACCCGGCGAAAGC-CG-GGGACGCGAA-AGCCG-U-GAGUCUAAGGCAUUCGUGCACCGCUUCGGGCACGG--------------------------------------------------------------------GUGCUAUG-ACCGUCA-GGUUGCCGCU-C-
+URS0000D65DAE_12908/1-84                  ---AGCUACAAGGCCAAACCCGUCGUGAGA-CGGGGGACGGGAA-AACCA-U-GGGUC----UCCAGCUUGC------------------------------------------------------------------------------------UGGA---G-AUCGCCA-GGUUGCCGGU-U-
+URS0000D65EEA_12908/1-79                  ---CCUGACAAAGCUAACCUUUCCGUGUGA-AG-GGGAUAGGA--AGUAU-U-GGGUU--------UUAUGAAGGUA--------------------------------------------------------------------------------------G-AUGGCCG-AACUGCCGAA-A-
+URS0000D660DF_12908/1-89                  ---CCCAUCAAGGGUAAGCCCGGCAAAAUC-CG-GGGGAGCGA--AGCUAAG-GGAUCUGAGACGGUUAAU-------------------------------------------------------------------------------------CUGCUAUG-GUAGCCC-GGCUGCUGGG-A-
+URS0000D69479_12908/1-85                  ---CCACGAUUAGGCAAACCCUGCAAAAGC-AG-GGGGCGCGA--AGCUA-AAGGGCCUAAGGGC-AAAA---------------------------------------------------------------------------------------GCCUAUG-GCAGCC--AGUUGCCGAC-G-
+URS0000D683BF_12908/1-150                 ---CCUCGAAGAGGCAAACUCCGGGUCACC-GG-AGGACGCGA--AGCCA-C-GGGCU--------CUCAAAGACAGUGGAACGUUGACAGUGGAACGUUGAACGUCAAACGCCUUCCACUGAAACGUUCAACGUUCCACUGUGUUCC---------------G-GAAGCCG-GGCUGCCGAA-A-
+URS0000D67B5A_12908/1-97                  ---CCUCGAAAAGGCAAACUGCGCGAAAGU-GC-AGGACGCGA--AGGAA-C-GGGUC--------CUCAUCUAGUGGGAAAAGCGCUCGG---------------------------------------------------------------------CGCG-AGCGCCCCUUCUACCUAA-G-
+URS000080E2D1_666/1-92                    GGUCACGCACAGGGCAAACCAUUCGAAAGA-GU-GGGACGCAA--AGCCU-C-CGGCCUA----AA----CCA---UUGCAC--------------------------------------------------------------------------UCCGGUAG-GUAGCGG-GGUUACCGA-UGG
+#=GR URS000080E2D1_666/1-92     3IRW_R_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((..........((.......................................................................................))))).)).}))).))))..))..)).
+#=GR URS000080E2D1_666/1-92     3MXH_R_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((..........((.......................................................................................))))).)).}))).)))...))...))
+#=GR URS000080E2D1_666/1-92     3UCU_R_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((..........((.......................................................................................))))).)).}))).)))...))...))
+#=GR URS000080E2D1_666/1-92     3UCZ_R_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((..........((.......................................................................................))))).)).}))).)))...))...))
+URS000080DFCB_666/1-93                    ---CACGCACAGGGCAAACCAUUCGAAAGA-GU-GGGACGCAA--AGCCU-C-CGGCCUAA-ACGGC----------AUUGCAC----------------------------------------------------------------------UCCGCCGUAG-GUAGCGG-GGUUACCGA-UGG
+#=GR URS000080DFCB_666/1-93     3IWN_A_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((...((((..........................................................................................))))))).)).}))).)))...))...))
+#=GR URS000080DFCB_666/1-93     3IWN_B_SS ...((((......((...((((((....)).)).))..{)).....(((..(.(((((((...((((..........................................................................................))))))).)).}))).)))...))..)).
+#=GC SS_cons                              ...(-((,,,,,,<<---<<<<<<____>>.>>.>>--A>>,,..<<<<-.<.<<<<<....___._______...................................................................................._._...>.>>-a>>>.>>>>,,))--.).
+#=GC RF                                   ...cacgaaAAAGGCAAACCcgcCGAAAGg.cg.GGGACGCGA..AgCcA.c.GGguC....ucc.uuaaaaa....................................................................................g.a...G.acAGCCg.gGcUGCcgaa.g.
+#=GC RNA_ligand_c-di-GMP                  =========XXXX===========================XXX=======================================================================================================================================X=======
+#=GC RNA_structural_elements              ==[P1a]======[===========P1b============]====[==========================================================P2=====================================================================]===[P1a]==
+//

raw_data/life/L017/L017.fasta ADDED Viewed

	@@ -0,0 +1,37 @@

+>0000 URS00005E2405 SRP_RNA from 13 species
+CCGUGCUAGGUGGGGAGGUAGCGGUUCCCUGUACUCGAAAUCCGCUUUAUGCGAGACUUAAUUCCUUUGUUGAGGGCGUA
+UUUUUGUGAAGUCUGCCCGAAGCACGUAGUGUUUGAAGAUUUCGGUCCUAUGCAAUAUGAACCCAUGAACCAUGUCAGGU
+CCUGACGGAAGCAGCAUUAAGUGGAUCCUCAUAUGUGCCGUAGGGUAGCCGAGAUUUAGCUGUCGACUUCGGUAACGUUU
+AUGAUAUGCGUUCGAUACAAAGGUGCAUGG
+>0001 URS0000D66071 ncRNA from 1 species
+AAAGAAAUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAUGACAAAUC
+>0002 URS0000030411 tRNA from 23 species
+GGGCCCAUAGCUCAGUGGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGUUCGAAUCCCAGUGGGUCCA
+>0003 URS0002330452 pre_miRNA from 1 species
+AUAAUCAACGAGAGUGUCAACCUGCCGCGAAGGUCUAUGAGUGGUCUGUUGCUCAUCUUUGUGUAGC
+>0004 URS0000D6ADF0 ncRNA from 1 species
+CGACUAGAAGGGCUGCACAAGUGGCUCGUUAGGGUUUAACCCUGUCUGGUUG
+>0005 URS0000D6CFB7 ncRNA from 1 species
+GUUACCACUGAGCGGUGGCUGUCGUGAGGUACUGGGGAGUACUGCUGACCGGCGGGUACCGAGUCUGGGCUACAGCCAAG
+GGAAUGGGCCUGGACGUUUCAGUGAAGGAG
+>0006 URS000071BEE8 other from 1 species
+GUUUCCAUCCCCGUGAGGGGUAAGAGAUUAAAAAC
+>0007 URS0002334CE3 pre_miRNA from 50 species
+GCCUCCACCACCUCCCCUGCAAACGUCCAGUGACGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACA
+>0008 URS00006CD072 snoRNA from 3 species
+CGGCCAGCGAAAACACAGGCGCCGUGCUUGCAACGAUCACUUCGCCUGCACCUGUGCUGCCCCAGA
+>0009 URS000067F3CB other from 1 species
+GGUUUAAUCCCUUGUAGGGAUUCUUAUUUAUGGAAC
+>0010 URS0000D66071 ncRNA from 1 species
+AAAGAAAUCCCUUUACAACGGAUCGUGAGGCACGUACCUGCCUCUGAAAGGAUGACAAAUC
+>0011 URS0000220402 snoRNA from 5 species
+GAGCAAUGACGUCAAAAUAAAAAUGGCGUAAGUUGCCUUGAAGGUUGGCAACAACAAAUAGCGAUUCUCCGUGCCUAUCA
+AGUUUUCUAAUCUUGAUUGUUGGCCUCGAACAAGUCGCUACAUU
+>0012 URS00006C4AF3 sRNA from 1 species
+AAACAAAGGUAUCGACACUAGUCAGCGAGGGUUCGCCCACUAGUGCGAUUUUU
+>0013 URS0000D6A7FB ncRNA from 1 species
+UUCGAUAAAGCCGAACCCAUCGAAAGAUGGGGACGGGAAACCACAAGUUUCAGAUAGUUUCGUUGAUUCAAGCUCCUAGU
+UUUUUUGGCGCUUCCUUAAGAUCUUGAUUCUCUACUAAACAGUAUUGAGCUGCAGCGC
+>0014 URS00007C08AA ncRNA from 12 species
+GUGAAAUUGAUCACAAACAAACAUUACCCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUCGUUAAGAC
+AUAUGAAACCGCGCUUAUCCCGGCGCGGUUUCUUU

raw_data/life/L020/.DS_Store ADDED Viewed

Binary file (6.15 kB). View file

raw_data/life/L020/0000-RF00001.stockholm ADDED Viewed

The diff for this file is too large to render. See raw diff

raw_data/life/L020/0001-RF00145.stockholm ADDED Viewed

	@@ -0,0 +1,53 @@

+# STOCKHOLM 1.0
+#=GF ID snoZ105
+#=GF AC RF00145
+#=GF DE Small nucleolar RNA Z105
+#=GF AU Wilkinson AC; 0000-0001-7406-0151
+#=GF GA 45.0
+#=GF NC 44.9
+#=GF TC 45.0
+#=GF PI snoR7
+#=GF SE Predicted; CMfinder
+#=GF SS Predicted; CMfinder
+#=GF TP Gene; snRNA; snoRNA; CD-box;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.34 -Z 2958934 CM SEQDB
+#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
+#=GF DR SO; 0000593; C_D_box_snoRNA;
+#=GF DR GO; 0006396; RNA processing;
+#=GF DR GO; 0005730; nucleolus;
+#=GF RN [1]
+#=GF RM 12736310
+#=GF RT The high diversity of snoRNAs in plants: identification and comparative
+#=GF RT study of 120 snoRNA genes from Oryza sativa.
+#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
+#=GF RL Nucleic Acids Res 2003;31:2601-2613.
+#=GF RN [2]
+#=GF RM 12007400
+#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
+#=GF RT cellular functions.
+#=GF RA Kiss T
+#=GF RL Cell 2002;109:145-148.
+#=GF CC This family consists of several snoRNA Z105 sequences which are members of
+#=GF CC the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box
+#=GF CC motifs. This family seems to be found exclusively in plants. C/D box small
+#=GF CC nucleolar RNAs are known to act as a methylation guides for 18S ribosomal
+#=GF CC RNA [1].
+#=GF WK Small_nucleolar_RNA_Z105
+#=GF SQ 11
+AAAA02011125.1/45898-45831 UUGGCAUGAUGAGGAA----ACCUUACGUUUAU--CUGAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA
+AJ489950.1/1-67            UUGGCAUGAUGAGGAA----AACCGAUGUUUUUG---GAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA
+AC189189.1/52925-52858     AAGGCAUGAUGAGGAU-----UGUUU-AUUGUCAUCUGAUUUUC-UGA--UGAAUCAAUACCUCCUACUCAUUCUGA
+AL049862.1/41945-41876     AAGGCAUGAUGAGGAU-----UGUUUUAUUGUCAUCUGAUUCUCAUGA--UGAAUAUAUACCUCCUACUCAUUCUGA
+AARH01002622.1/16153-16085 AGGCAAUAAUGAUGAA-----AGAUUUAA-AUUAUCUUAUAUGUAUGA--UGAUUCAACACCUCCUACUCAUUCUGA
+AC193778.1/40019-39952     GCAUAAUGAUGAUGCA---------AAAUUUGUUCCGAUUAUUCAUGAAUGGAAUACCAACCUCCUACUCAUUCUGA
+AP006540.1/42483-42559     CUGGCAUGAUGAUGAUAAUUACGAUUGAUUUUGUAUGAUUAUUCAUAUGAUUAAUACAAUCCUCCUACUCAUUCUGA
+AASG02002047.1/5497-5426   GCAUAGUGAUGAUGAA-----CUUGAAAUUUCCCGAUGAUUUUCAUGACAGGAAUAACAACCUCCUACUCAUACUGA
+ABCN01006793.1/11445-11379 -UGGCU--AUGAGGAA-------ACACCUGUCUGAUCAUUUGAACUGAUGAGACCAAUCACCUCCUACUCAUUCUGA
+FN596742.1/723319-723247   UUGGUAUGAUGAUGAAC---AUAACA-AUUAUUUUCUGAUGAUUCUUGAUUGAAUAAUAACCUCCUACUCAUUCUGA
+AP003829.2/81303-81234     UUGGCAUGAUGAGGAA----AUCAAUCGUUUCUAACUGAUCCACUGGAUGAGA--AAUU-CCUCCUACUCAUUCUGA
+#=GC SS_cons               :::::<<<<-------.....----------<<--<__________>---->>--------------->>>>:::::
+#=GC RF                    uuGGcAUGAUGAuGAA.....ugauauAUUUucaucUgAUuUucaUgAugugaAUAAuuACCUCCUACUCAUUCUGA
+//

raw_data/life/L020/0002-RF02452.stockholm ADDED Viewed

	@@ -0,0 +1,87 @@

+# STOCKHOLM 1.0
+#=GF ID ncr1575
+#=GF AC RF02452
+#=GF DE Bacillus sRNA ncr1575
+#=GF AU Eberhardt R; 0000-0001-6152-1369
+#=GF GA 60.0
+#=GF NC 59.2
+#=GF TC 60.0
+#=GF SE Eberhardt R
+#=GF SS Published; PMID:20525796
+#=GF TP Gene; sRNA;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 35.30 -Z 2958934 CM SEQDB
+#=GF DR SO; 0000370; small_regulatory_ncRNA;
+#=GF RN [1]
+#=GF RM 20525796
+#=GF RT Identification of regulatory RNAs in Bacillus subtilis.
+#=GF RA Irnov I, Sharma CM, Vogel J, Winkler WC
+#=GF RL Nucleic Acids Res. 2010;38:6637-6651.
+#=GF WK Bacterial_small_RNA
+#=GF SQ 29
+AEFY01000060.1/10854-11054 UUAAUAACAUGAGAAGGGA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AACGUUUGAAAU-U-G-AU--AUUU--CAAAU--CAU--ACAAA-AUA-GGAUUAGUCUGCCCAUU-UUCUAUAU-------ACGUAAGC------GCUAUUUCUGAA-----------------------------GAAUAG
+CP000560.1/574422-574226   UAA--CAAAUACGAAGGGA-UGAUGGGUGGACAAUGAUUAACUAAUCU-UAUUUUG-ACCGUUUGAAAU-C-AAAU--AUUU--CAAAU--CAG--AAAAA-AUA-GGAUUAGUCUGCCCAUU-UUCUAUACGA----UACGAAA--------GCUAUGUA---A-----------------------------AAAUAG
+AAOX01000024.1/57078-56873 CAACUAAGUGCGAAAGGAA-UGAUGGGUGGACGAUGGAUAACUGAUCU-UAUUUUUUCUUGAUUGAAAU-AGC-AU--AUUU--CAAUU--CACACAAAAA-AUA-GGAUUAGUCUGCCCAUU-UUUCACUU-A----UACAUCAUUC----AGCCAUUA-UG-A-----------------------------UAAUGG
+CP000227.1/2437378-2437587 UAUUAACGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUUC-A-AUACAUUU--CAAUUUCUA----AAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAU---GUU-----------------------GCGCAAUAG
+ACMD01000088.1/8944-9153   UACUAACGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUUC-A-AUAAAUUU--CAAUU--U-A-UAAAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCUUAC-A-----ACGGUAUU------GCUAUUUAUU-AUG-------------------------CGUAAUAG
+CP001176.1/2494406-2494615 UAUUAACGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUUAAAUGUUGAAAUU-C-A-AU-AAAUU--UCAAU--UUC-UAAAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAUA-UUG-------------------------CGCAAUAG
+ACLT01000056.1/51155-51364 UAUUAAUGACAGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUUAAAUGUUGAAAUU-C-A-AU-AAAUU--UCAAU--UUC-UAAAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAG-A-----ACGGUAUU------GCUAUUUAU--GUU------------------------ACGUAAUAG
+ACMY01000063.1/95493-95702 UACUAAUGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUGA-A-AUAAAUUU--CAAUUUCUA----AAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAUA-UUG-------------------------CGCGAUAG
+ACNK01000052.1/72455-72664 UACUAAUGAGGGGAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUUAAAUGUUGAAAUU-C-A-AU-AAAUU--UCAAU--UUC-UAAAAA-AUA-GGAUUAGUCUGCCCGAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAU---GUU-----------------------GCGUAAUAG
+ACMF01000050.1/21045-21254 UAUUAAUGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUUAAAUGUUGAAAUU-C-A-AU-AAAUU--UCAAU--UUC-AAAAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAU---GUU-----------------------GCGCAAUAG
+ACNC01000090.1/185-394     UACUAACGAUGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUUAAAUGUUGAAAUU-C-A-AU-AAAUU--UCAAU--UUC-UAAAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUUUU------GCUAUUU-----GAUU---------------------UGCGUAAUAG
+ACMU01000051.1/2518-2309   UACUUAUGACGGAAAGGAU-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUUA-A-AUAAAUUU--CAAUUUCUA----AAAA-AUA-GGAUUAGUCUGCCCAAU-UUCCAUAC-A-----ACGGUAUU------GCUAUUUAU--GUU------------------------GUACAAUAG
+ACMJ01000045.1/2590-2799   UACUAACGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUUA-A-AUAAAUUU--CAAUUUGUA----AAAA-AUA-GGAUUAGUCUGCCCAA--UUCCAUUC-A-----ACGGUAUU------GCUAUUU-----GAUU---------------------UGCGUAAUAG
+ACLS01000064.1/23579-23787 UACUAAUGACGGAAAGGAA-UGAUGGGUGGACGAUGAUUAACUAAUCU-UAUUUUU-AAAUGUUGAAAUGA-A-AUAAAUUU--CAAUUUAUA----AAAA-AUA-GGAUUAGUCUGCCCAA--UUCCAAAC-A-----ACGGUUUU------GCUAUUU-----GAUU---------------------UGCGUAAUAG
+AGIP01000011.1/90019-90227 GAACAUAAUGAUGAGAGGACUGAUGGAUGGACAAUGGUUAACUAAUCU--AUAUUU-U-UAUUUGAGUU-G-A-AU--AACUUCCAAAU-ACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UCUAUAA-A----UCAGU----------G-UACAUG-------UCAUGAAUUUAAUGGCAAACU-----ACAAAC
+CP000817.1/2916920-2917132 -UAUACAAUUAUGAGAGGACUGAUGGAUGAACAAUGAUGAACUAAUCU--AUAUUU-UAAG-UUGAAAU-C-A-AU-UACUU--CAAACUACA----AAAU-AUA-GGAUUAGUCUGUCCAUU--UUUAUUC-A----UCAGUUUAU------ACUUUAU-------UUGUCAUUU------UCCUAUGGCA--AAAAGG
+AL009126.3/606606-606407   UAAUCAAAACAAGAAGGGA-UGAUGGGUGGACAAUGAUUAACUAAUCU-UAUUUUU-ACCGUUUGAAAU-C-A-AU--AUUU--CAAAU--CA----AAAA-AUA-GGAUUAGUCUGCCCAUU-UUCUAUAU-A----UACGACACU------GCUAUUUAUAAA-----------------------------AAAUAG
+AFRV01000003.1/54844-55060 AAAUACAAUUAUGAGAGGACUGAUGGAUGGACAAUGAUUAACUAAUCU--AUAUUU-U-UAUUUGAAAU-G-A-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-A----UCAG--UUU------ACACUUUAU---UUGUCAUGAUU-------CCAAUGGCAAAAAAGAG
+AJ293027.1/6225-6003       UACUAUUAAUCGAAAGGAG-AGAUGGGUGGACAAUGAAGAACUAAUCU-AAUUUUU-AACAAAUGAAAU-AGU-AU--AUUU--CAGUU--UA----AAAA-CUUAGGAUUAGUCUGCCCAUUUUUCCAUAU-AC---UAAAUAAAU------GUAAGACUG---AAUAGCUAAA--------AAGGCUAAAUAGUUUUA
+AAXV01000013.1/57287-57073 AUAUACAAUUAUGAGAGGACUGAUGGAUGAACAAUGAUGAACUAAACU--AUAUUU-UAAG-UUGAAAU-C-A-AU-UACUU--CAAACUACA----AAAU-AUA-GGAUUAGUCUGUCCAUU--UUUAUCA-A----UCAGUUUAU------ACUUUUUUC---GUCAUUUU------------CCUAUGGCAAAAAAG
+ACMV01000132.1/9772-9988   AAAUAGAAUUAUGAGAGGACUGAUGGAUGAAUAAUGAUUAACUAAUCU--AUAUUU-UAA-UUUGAAAU-U-A-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-A-----UCA-----------GUUCAUACU---UUAUUUGUCAUGA---UUCCAAUGAUUAAUAAGAA
+ADJR01000035.1/12266-12474 AAAGACAAUUAUGAGAGGACUGAUGAAUGGACAAUGAAGAACUAAACU--AUAUUU-U-UAUUUGAAUU-G-A-AU-GAUUU--CAAAC-ACA----AAAU-AUA-GGGUUAGUUUAUCCAUU--UUUAACA-A-----UCAGUU-U------GCAUUGUAU---UUGUC------------------AUGACACAAAUG
+ACMZ01000088.1/41335-41548 AAUAGAAUUAUGAAAGGAA-UGAUGGAUGAAUAAUGAUUAACUAAUUU--AUAUUU-UAAG-UUGAAUU-U-U-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU-UUUAAAAU-U-----CAGUUCAU------ACUUUAUUU----GUCAUGAU----------UCAAAUGAUUAAUAAG
+ACLW01000071.1/41842-42052 AAAUAGAAUGAUGAAAGGAAUGAUGGAUGAAUAAUGAUUAACUAAUUU--AUAUUU-UAAG-UUGAAUU-U-U-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-UU---CAUUUCAUA-----CUUUAUUUAU---CAUG---------------------AUUCAAAUGA
+CP002508.1/3357927-3358143 AAAUAGAAUGAUGAAAGGAAUGAUGGAUGAAUAAUGAUUAACUAAUUU--AUAUUU-UAAG-UUGAAUU-U-U-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-------UUCAUUUC------AUACUUUAU---UUGUCAUGAUU-------CAAAUGAUUAAUAAGUA
+ABCZ02000041.1/1982-2197   AAAUAGAAAUAUGAAAGGAAUGAUGGAUGAAUAAUGAUUAACUAAUUU--AUAUUU-UAA-UUUGAAUU-U-U-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-U----U--CAUUUC------AUACUUUAU---UUGUCAUGAUU-------CAAAUGAUUAAUAAGUA
+CP000001.1/2406369-2406154 AAAUAGAAUGAUGAAAGGAAUGAUGGAUGAAUAAUGAUUAACUAAUUU--AUAUUU-UAAG-UUGAAUG-U-U-AU-AACUU--CAAACUACA----AAAU-AUA-GGGUUAGUCUAUCCAUU--UUUAUAA-U----U--CAUUUC------AUACUUUAU---UUGUCAUGAUU-------CAAAUGAUUAAUAAGUA
+HQ128580.1/8169-7952       UCUUCAAAUAUGAAUGGAC-UACUGGGUGGAAGAUAAUUAACUAAUCUGUAUUCUU-CUAAUUUGAAAU-G-A-AUAAGUUU--CAAAG--UAC--UAAGAUAUA-GGAUUAGUC-AUCCAUU-UUUUUUAA-A----UCAGUUUAACUAGAUGUUUUGU-U------UGUCG-------------AAUGA-C-AAAAAA
+AJ579365.1/3731-3942       AAAUAAAUAGACGAAAGGACUGACUGUAUAAUAAUGAUUUACUAAUUC----AACU-U--AUUUGAAAU-A-A-AU--AUUU--CAAACUCUA----AGUU-AUA-GGAUUAGUCUGAUCAUU--UUUAUAA-GUCGGUUUGUGACA------CCUAUUGCG---U--CAAAUG-----------CUGUUGGUACAAUAG
+#=GC SS_cons               :::::::::::::::<<<<.---<<<<--<<<----------<<<<<<.<<<<<<<.---<<<<<<<<<._._.__._>>>>..>>>>>----....>>>>.>>>.>>>>>>>>>-->>>>--.>>>>::::.:....::<<<----......<<<<<<<__..._____..................______>>>>>>
+#=GC RF                    uAaUAaaaauaugAAggaa.UGAUGGgUGGAcaAUGAUUAACUAAuCU.uAUuuUU.uAaguUuGAAaU.u.a.AU.AAuUU..CaAacUauA....AAaa.AUa.GGaUUAgUCUgcCCAUU.uuccAUAa.A....Uacguuauu......gcuauuuaU...uuuua..................uauauaaaauag
+AEFY01000060.1/10854-11054 C-UUAUUUGAUCAUGGCAAA--G--GC--A-CGGCUAAUCCUUCCA-A--AA-CA--UUUGGGAGGAUUUUUUG
+CP000560.1/574422-574226   C-UUAUUUGAUCAUG-CACA--G--GU--A-CGGCUAAUCCUUCCA-A--AU-CA--AUUGGGAGGAUUUUUUU
+AAOX01000024.1/57078-56873 U-UUAUUUGCUGAUG-CAAA--G--GU--A-CGGCUAAUCCUUCCA-A--UU-CA--AUUGGGAGGAUUUUUUU
+CP000227.1/2437378-2437587 C-UUAUUUGGGUAUA-AAUA--UUUUA--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACMD01000088.1/8944-9153   C-UUAUUUGGGUAUA-AAUA--U--GUUAA-CGACUAAUCCUGCCA-A--AUUAA--UUUGGGAGGAUUUUUUU
+CP001176.1/2494406-2494615 C-UUAUUUGGGUAUA-AAUAAUG--UA--A-UGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACLT01000056.1/51155-51364 C-UUAUUUGGGUGUG-AAUA--UUUUA--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACMY01000063.1/95493-95702 C-UUAUUUGGGUAUA-AAUA--UUUUU--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACNK01000052.1/72455-72664 C-UUAUUUGGGUGUA-AAUAUUU--UA--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACMF01000050.1/21045-21254 U-UUAUUUGGGUAUA-AAUA--UUUUA--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUA
+ACNC01000090.1/185-394     C-UUAUUUGGGUAUA-AAUAAUG--UA--A-UGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUA
+ACMU01000051.1/2518-2309   C-UUAUUUGGGUAUA-AAUA--UUUUA--A-UGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+ACMJ01000045.1/2590-2799   C-UUAUUUGGGUAUA-AAUAAUG--UA--A-UGACUAAUCCUGCCA-A--AA-UUACUUUGGGAGGAUUUUUUU
+ACLS01000064.1/23579-23787 C-UUAUUUGGGUAUA-AAUA--UUUUA--A-CGACUAAUCCUGCCA-A-AUU-UA--UUUGGGAGGAUUUUUUU
+AGIP01000011.1/90019-90227 U----UAUUU--AUG-AAAA--U--UA--A-CGGCUAAUCCUUCCAUA--UC-CA--UUUGGGAGGAUUUUUUA
+CP000817.1/2916920-2917132 UCCUUUAUUAUU----ACCU--G--UA--ACCGACUAAUCCUUCCA-A--UG-AA--AUUGGGGGGAUUUUUUU
+AL009126.3/606606-606407   C-UUAUUUGAUCAUG-CACA--G--GC--A-CGGCUAAUCCUUCCA-A--CA-CA--UUUGGGAGGAUUUUUUU
+AFRV01000003.1/54844-55060 C-UUAU-UUACUAU---AAG--U--GA--A-AGACUAAUCCUUCCA-A-UUACAA--AUUGGGAGGAUUUUUUA
+AJ293027.1/6225-6003       U-UUGAGUCCUUAAA-AAGU--G--AC--A-UGACUAAUCCUUCCA-A-CAU-UA--UUUGGGAGGAUUUUUUA
+AAXV01000013.1/57287-57073 U-CCUUAAU-CAAUA-CCUG--U--AA--C-CGACUAAUCCUUCCA-A-UGA-CA--AUUGGGGGGAUUUUUUU
+ACMV01000132.1/9772-9988   C-UUAU-UAAGUAUA-AG----U--GA--G-AUACUAAUCCUUCCG-A-UUACAA--AUUGGGAGGAUUUUUUU
+ADJR01000035.1/12266-12474 G-CAAAUCGUAUUUA-UUUA--G-UGA--A-AGACUAAUCCUUCCA-AUGCA-CA--AGUGGAGGGAUUUUUUC
+ACMZ01000088.1/41335-41548 U-ACUUAUUAA-GUA-UAGA--C--GA--A-AGACUAAUCCUUCCG-A-UUA-CA--AUUGGG-GGAUUUUUUU
+ACLW01000071.1/41842-42052 U-UAAUAAGUACUUA-CUUA--AGCGA--C-AGACUAAUCCUUCCG-A-UUA-AA--AAUCGGGGGAUUUUUUU
+CP002508.1/3357927-3358143 C-UUACUUAAGUAUA-AGC------GA--C-AGACUAAUCCUUCCG-A-UUA-AA--AAUUGGGGGAUUUUUUU
+ABCZ02000041.1/1982-2197   C-UUAUU-AAGU--A-UAAG--A--GA--C-AGACUAAUCCUUCCG-AUUAA-UA--AUUGGG-GGAUUUUUUU
+CP000001.1/2406369-2406154 C-UUAU---UAAGUA-UAAA--A--GA--C-AGACUAAUCCUUCCG-A-UUA-AA--AAUUGGGGGAUUUUUUU
+HQ128580.1/8169-7952       C-UCUUA-UUUAGUA-UAAA--U--GA--A-UAGAUAAUCCUUCCA-A-UAA-UA--AUUGGGAGGAUUUUUUA
+AJ579365.1/3731-3942       GGACUUUUAAAUAUG-A-----G--AC--C-AGAUUAAUCCUUCCA-A--AU-UC--UUUGGAAGGAUUUUUAU
+#=GC SS_cons               >.---->>>::::::.::::..:..::..:.:::::<<<<<<<<<<.<.___.__.._>>>>>>>>>>>:::::
+#=GC RF                    c.UuaUacgauuAUA.aAuA..u..ga..A.aGACUAAUCCuuCCA.a.uuu.uA..uuUGGgaGGAUUUUUUu
+//

raw_data/life/L020/0003-RF01820.stockholm ADDED Viewed

	@@ -0,0 +1,56 @@

+# STOCKHOLM 1.0
+#=GF ID RsaE
+#=GF AC RF01820
+#=GF DE RNA Staph. aureus E (RoxS)
+#=GF AU Moore B; 0000-0002-4074-1933
+#=GF GA 79.0
+#=GF NC 78.9
+#=GF TC 79.3
+#=GF PI ncr22; ncr629
+#=GF SE Published; PMID:19786493
+#=GF SS Published; PMID:19786493
+#=GF TP Gene; sRNA;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
+#=GF DR GO; 0006446; regulation of translational initiation;
+#=GF DR SO; 0000370; small_regulatory_ncRNA;
+#=GF RN [1]
+#=GF RM 19786493
+#=GF RT A search for small noncoding RNAs in Staphylococcus aureus reveals a
+#=GF RT conserved sequence motif for regulation.
+#=GF RA Geissmann T, Chevalier C, Cros MJ, Boisset S, Fechter P, Noirot C,
+#=GF RA Schrenzel J, Francois P, Vandenesch F, Gaspin C, Romby P
+#=GF RL Nucleic Acids Res. 2009;37:7239-7257.
+#=GF RN [2]
+#=GF RM 25643072
+#=GF RT A nitric oxide regulated small RNA controls expression of genes involved
+#=GF RT in redox homeostasis in Bacillus subtilis.
+#=GF RA Durand S, Braun F, Lioliou E, Romilly C, Helfer AC, Kuhn L, Quittot N,
+#=GF RA Nicolas P, Romby P, Condon C
+#=GF RL PLoS Genet. 2015;11:e1004957.
+#=GF CC It was shown to be regulated by the presence of nitric oxide (NO). In
+#=GF CC Bacillus subtilis it controls expression of genes with functions related
+#=GF CC to oxidative stress and oxidation-reduction reactions and it was renamed
+#=GF CC RoxS (for related to oxidative stress).[2]
+#=GF WK Rsa_RNA
+#=GF SQ 15
+ABQL01000005.1/214304-214418 GUGAAAUUGAUCACA-AA-CAAAC---A-----UU--AC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUC--GUUAA-----GACAUA--UGAAACCGCGCU---U-----AUCCCGGCGCGGUUUCUUU
+ABFU01000021.1/68350-68459   GUGAAGUUGAUCACA-AA-CAAAC---A------UAUAC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUU--C--GUAAA-----G-GAAA--ACCCCUUGUAAC-----------CUAGUUACAAGGGGUUU
+CP000922.1/2095013-2094892   GUGAAGUGAAUCACA-AU-CAAAC---AAACUUAU--AC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUC--UUUAU-----GACAAAGAAAAAGGACUCGG---C-----AUCCCCCGAGUCCUUUUUC
+ABCF01000041.1/14193-14301   AAGAAGUUGAUCACA--A-CAAAC---A------UAUAC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUU-----UGUAU--------AAG--AAAACCCGUUGU---C-----UUCGGACAACGGGUUUUCU
+AP009484.1/660819-660915     AUGAAAUUGAUCACA-UACCAAAC---A------U--AC--CCCUUUGUUUGA--GUGAAAGAUUUCUCCCAUCCCCUUUGU--------------------U---UAAUACCGUG-----U-----AUACAGACACGGUAUUUUU
+AP008934.1/1857525-1857428   AUGAAAUUAAUCACAUAA-CAAAC---A------U--AC--CCCUUUGUUUGAA-GUGAAAAAUUUCUCCCAUCCCCUUUGU--------------------U---UAGCGCCGUGU----A-----AUCAG-ACACGGCGUUUUU
+AM295250.1/605317-605414     AUGAAAUUAAUCACAUAA-CAAAC---A------U--AC--CCCUUUGUUUGAA-GUGAAAAAUUUCUCCCAUCCCCUUUGU--------------------U---UAGCGCCGUGUC---U-------GAAUACACGGCGUUUUU
+CP000255.1/991517-991614     AUGAAAUUAAUCACAUAA-CAAAC---A------U--AC--CCCUUUGUUUGAA-GUGAAAAAUUUCUCCCAUCCCCUUUGU--------------------U---UAGCGUCGUG-----U-----AUUCAGACACGACGUUUUU
+CP000817.1/1311650-1311762   GUGAAAUAAAUCACAAAA-CAAAC---A------U--ACACCCCUUUGUUUGAACGUGAAC-AUUUCUCCCAUCCCCUUUGU--------GAA---------AA--AGAAGCGUCUCUAUC-GGUCGAGGAUAGAGGCGUUUCUUU
+ACNH01000027.1/21597-21717   GUGAACGAAUUCACA-UA-CAAAC---A------UAUAC--CCCUUUGUUUGAACGUGAAAAU-UUCUCCCAUCCCCUUUAAUAUUUUUAUAAGC-CGUAAAGA--AGAAGACCUGGU---G-----UUUACACCAGGUCUUCUUC
+ACLW01000041.1/9530-9650     GUGAACGAAUUCACA-UA-CAAAC---A------UAUAC--CCCUUUGUUUGAACGUGAAAAU-UUCUCCCAUCCCCUUUAAUAUUUUUAUAAGCCGUAAAGAA--GAAGACCUGGUG---U-----UUU-ACACCAGGUCUUUUU
+CP000002.3/1262536-1262653   GUGAAAUUGAUCACA-AA-CAAAC---A------UUUAC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGU--CGUUAAGA-CA--UAAU--AGAAACCGCGCU---U-----AUCCCGGCGCGGUUUCUUA
+ABRX01000001.1/691882-691767 GUGAAAUUAAUCACA-UA-CAAAC---A------U-UAC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUC--GUUAA-----GACAUA-GUGAAACCGCGCU---U-----AUCCCGGCGCGGUUUCUUC
+CP001638.1/846669-846782     GUGAACGAAGUCACA-AA---AACCUUA------U--AC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUC--UUGGC-----AACAAG--GAAAAGCCCGGC---------AUUCAGCCGGGCUUUUCCU
+CP002472.1/906962-907066     GUGAAGUUGAUCACA-AG-CAAAC---A------U--AC--CCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGU--UC--GUGUU-----G---AA--AGAGGCCUUGCA---A-----A----CGCAAGGCCUCUUU
+#=GC SS_cons                 ::<<<<<<--<<<<-.--.<<<<<...<......_..__.._____>>>>>>--->>>>-->>>>>>:::::::::::::::<.-<.._____.....>.->::..:<<<<<<<<<<<..._....._____>>>>>>>>>>>:::
+#=GC RF                      gUGAAauuaaUCACA.aA.CAAAC...A......U..AC..CCCUUUGUUUGAaCGUGAAAaauUUCUCCCAUCCCCUUUGUu.Uc..uuuAa.....g.aaaa..agaggccgcgcc...u.....aUuaaggcgcggccucUUu
+//

raw_data/life/L020/0004-RF01347.stockholm ADDED Viewed

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+# STOCKHOLM 1.0
+#=GF ID CRISPR-DR37
+#=GF AC RF01347
+#=GF DE CRISPR RNA direct repeat element
+#=GF AU Wilkinson A; 0000-0001-7406-0151
+#=GF GA 40.0
+#=GF NC 39.7
+#=GF TC 40.0
+#=GF SE Predicted; WAR; Wilkinson A
+#=GF SS Predicted; WAR; Wilkinson A
+#=GF TP Gene; CRISPR;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 24.00 -Z 2958934 CM SEQDB
+#=GF DR URL; http://crispr.u-psud.fr/crispr/CRISPRHomePage.php;
+#=GF DR SO; 0001459; CRISPR;
+#=GF DR GO; 0006952; defense response;
+#=GF RN [1]
+#=GF RM 17521438
+#=GF RT The CRISPRdb database and tools to display CRISPRs and to generate
+#=GF RT dictionaries of spacers and repeats.
+#=GF RA Grissa I, Vergnaud G, Pourcel C
+#=GF RL BMC Bioinformatics. 2007;8:172.
+#=GF WK CRISPR
+#=GF SQ 3
+BA000019.2/2179133-2179167 GUUUCCAUCCCCGUGAGGGGUAAGAGAUUAAAAAC
+CP000117.1/4244596-4244630 GUUUCCAUCCCCGUGAGGGGUAAAGGAAUUAAAAC
+AAXW01000070.1/13590-13624 GUUUCCAUCCCCGUGAGGGGAAUAAGUGUUUUGAA
+#=GC SS_cons               :<<<----<<<<____>>>>---->>>::::::::
+#=GC RF                    GuUuCCAUCCCCGUGAGGGGuAaAaGaaUUaaAAc
+//

raw_data/life/L020/0005-RF03064.stockholm ADDED Viewed

The diff for this file is too large to render. See raw diff

raw_data/life/L020/0006-RF00644.stockholm ADDED Viewed

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+# STOCKHOLM 1.0
+#=GF ID mir-27
+#=GF AC RF00644
+#=GF DE microRNA mir-27
+#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
+#=GF GA 48.5
+#=GF NC 48.4
+#=GF TC 48.5
+#=GF SE Griffiths-Jones SR
+#=GF SS Predicted; RNAalifold
+#=GF TP Gene; miRNA;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
+#=GF DR MIPF; MIPF0000036;
+#=GF DR SO; 0001244; pre_miRNA;
+#=GF DR GO; 0016442; RISC complex;
+#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
+#=GF RN [1]
+#=GF RM 17604727
+#=GF RT A mammalian microRNA expression atlas based on small RNA library
+#=GF RT sequencing.
+#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
+#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
+#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
+#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
+#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
+#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
+#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
+#=GF RA JJ, Sander C, Zavolan M, Tuschl T
+#=GF RL Cell. 2007;129:1401-1414.
+#=GF RN [2]
+#=GF RM 15937218
+#=GF RT The developmental miRNA profiles of zebrafish as determined by small RNA
+#=GF RT cloning.
+#=GF RA Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John
+#=GF RA B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T
+#=GF RL Genes Dev. 2005;19:1288-1293.
+#=GF RN [3]
+#=GF RM 18256158
+#=GF RT MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1:
+#=GF RT predominance of virus-encoded microRNAs.
+#=GF RA Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V
+#=GF RL J Virol. 2008;82:4007-4015.
+#=GF CC This family represents the microRNA (miRNA) precursor mir-27 imported from
+#=GF CC miRBase.
+#=GF WK miR-27
+#=GF SQ 82
+URS0000233054_9606/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS0000233054_9593/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS0000233054_9597/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS0000233054_9598/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS0000233054_9544/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS00004BF382_9545/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCA
+URS00007E40AF_9615/1-60   ------------GGGCUUAGCUG--CUUGUGAGCAGAGUCCACACCAA-GUCGUGUUCACAGUGGCUAAGUUCCG--------
+URS000075E094_9796/1-77   CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCGA-GUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCG-
+URS0000D53314_29078/2-79  CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCUGCACCAAG-UCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
+URS00002DBD2B_9447/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAAAU-CAUGUUCACAGUGGCUAAGUUCCGCCCCCCGG
+URS000075A3CC_10029/2-79  CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAAGGUCCGCAGCAAGU-CGUGUUCACAGUGGCUAAGUUCCGCUCCCCCG
+URS000075AEFF_10090/5-83  CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAAGGUCCACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
+URS000075E954_10116/5-83  CUGUGGAGCA--GGGCUUAGCUG--CUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
+URS000075EBF7_9823/5-81   CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCA-GGUCCACAGCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGG
+URS000075DA7A_9913/5-78   CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCA-GGUCCACAUCAAA-UCGUGUUCACAGUGGCUAAGUUCCGCCCCC---
+URS000075BBBB_9940/5-78   CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCA-GGUCCACAUCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCC---
+URS00007E3732_9925/5-81   CUGGGGAGCA--GGGCUUAGCUG--CUUGUGAGCA-GGUCCACAUCAA-GUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCCG
+URS00007E3748_246437/1-62 ---------A--GGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCGA-GUCGUGUUCACAGUGGCUAAGUUCCGU-------
+URS00003A810C_9509/1-78   CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUUCACUCCAA-GUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS00003A810C_78454/1-78  CUGAGGAGCA--GGGCUUAGCUG--CUUGUGAGCAGGGUUCACUCCAA-GUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+URS000075BBA0_9258/5-80   CGGCGGAGCA--GGGCUUAGCUGG-CCUGUGAACAGUUAGU---UCCCUG-CGUGUUCACAGUGGCUAAGUUCCGCCCCUCCA
+URS000075CAB9_8364/1-76   CGGCGGCCCA--GGGCUUAGCUGU-AUUGUGAGCACUGUCACUCUCGC--ACCUGUUCACAGUGGCUAAGUUCCGCGCCUC--
+URS000075E885_7955/28-106 GUGAGGUGCA--GGACUUAGCUCACUCUGUGAACAGAUCUCGGA--UAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUCUG
+URS0000D50D92_7998/1-65   --------CA--GGACUUAGCUCACUCUGUGAACAGAUCUCGGA--UAUCCUAUGUUCACAGUGGCUAAGUUCCGCU------
+URS0000D51B8B_7962/1-75   --GAGGUGCA--GGACUUAGCUCUCUCUGUGAACAGAUCUCGGA--UAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUC--
+URS0000D50673_8030/1-64   ---------A--GGACUUAGCCAGCUUUGUGAACA--GAUCUGUGAAAGCCCAUGUUCACAGUGGCUAAGUUCCGCU------
+URS0000D55F91_8030/1-65   --------CA--GGACUUAGCUCGCUUUGUGAACA--GAUCUGUGAAAGCCUAUGUUCACAGUGGCUAAGUUCCGCU------
+URS000075CCAC_8364/4-81   UAGAGAGGCA--GGACUUAGCUGGCUCUGUGAACA-GGUCUUGUGUGU--CAAUGUUCACAGUGGCUAAGUUCCACCCCACUG
+URS000075DDB0_13616/5-83  UUGAGGAGCA--GGACUUAGCUGC-CUUGUGAACAGAGUCAGCAUCAUA-UUGUGUUCACAGUGGCUAAGUUCCGCUCCCCUU
+URS000075BDAF_8090/9-87   UGGAGGUGAA--GGGCUUAGCUCGCUCCGUGAACA--GUUCAGUGAAAACUCGUGUUCACAGUGGCUAAGUUCCGCUCCUCAC
+URS0000AB0776_7757/1-75   --GCAGUGCA--GGACUUAGUUG--CUUGUGAGCAGUGCCUUGCUUUCUGUCUUGUUCACAGUGGCUAAGUUCCACACCUC--
+URS000075C17A_10029/2-80  ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B194_9593/20-98  ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075EFC7_9598/9-87   ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B0A5_9600/10-88  ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B0A5_9544/10-88  ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B0A5_10116/10-88 ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B0A5_9606/10-88  ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS00007E3A07_246437/1-63 ---------A--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGC-------
+URS000075AAE1_10090/1-73  ---AGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCU---
+URS000075AF19_9913/10-88  ACGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS00007E37D7_9925/16-94  ACGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075E684_9823/1-79   ACGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS00007E377C_9615/1-63   ---------A--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGC-------
+URS0000D54725_29078/4-82  CCGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075D12B_9796/1-73   ---AGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGACUGGUUUCCGC-UUUGUUCACAGUGGCUAAGUUCUGCACCU---
+URS000075D27F_7955/6-84   AGCGGGUGCA--GAGCUUGGCUGA-UUGGUGAACG-UGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCACCCGAA
+URS0000D4FB27_7998/1-67   -------GCA--GAGCUUGGCUGA-UUGGUGAACG-UGCAUGGCUUGUGUUUUUGUUCACAGUGGCUAAGUUCUUCAC-----
+URS0000D51A15_7962/5-82   AGCGGGUGCA--GAGCUUAGCUGA-UUGGUGAACA-UGCACGCUUUGUUU-UUUGUUCACAGUGGCUAAGUUCUUCACCUGAA
+URS0000759C8F_13616/10-88 ACAAGGUGCA--GAGCUUAGCCGA-UUGGUGAACAGUCACUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075DE3D_9305/50-128 ACAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUAAUUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075CEBF_9031/10-88  GUGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGUUUCCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075B5AC_59729/10-88 GCGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGUUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS000075CC0D_31033/1-74  ---AGGCACA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUG--
+URS000075CC0D_99883/1-74  ---AGGCACA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUG--
+URS000075B802_8364/10-88  CCAAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUUCCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS00007E48D4_28377/1-76  -UGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUA--
+URS0000D54017_8665/2-80   GUGAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUUUCCUC-UUUGUUCACAGUGGCUAAGUUCUGCACCUGAA
+URS0000D55783_8030/1-63   ---------A--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUCUCCUC-UUUGUUCACAGUGGCUAAGUUCUGC-------
+URS000075B7A2_7955/9-84   AGCAGGUGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAAC----UCUUUGUUCACAGUGGCUAAGUUCUGCAUCUGAG
+URS0000D4F3AD_8030/1-61   ---------A--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAUCUCC---UUUGUUCACAGUGGCUAAGUUCUGC-------
+URS000075ECAD_9258/21-99  UCGCGGCGCA--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGCUGGACUC-UUUGUUCACAGUGGCUAAGUUCUGCGCCCGCA
+URS0000D4F491_7998/1-60   ---------A--GAGCUUAGCUGA-UUGGUGAACAGUGAUUGAAC----UCUUUGUUCACAGUGGCUAAGUUCUGC-------
+URS000075C1AB_7955/13-92  UCACGGCGCA--GAGCUUAGCUAA-UCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGA
+URS0000D51820_7998/1-64   ---------A--GAGCUUAGCUAA-UCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGU-------
+URS000075C0B0_8090/6-84   CUCAGAUGCA--GGACUUAGUUCA-UUGGUGAGCAUUGAGCCACACAGGA-AUUGUUCACAGUGGCUAAGUUCAGUACCUGAC
+URS000075B2F1_31033/8-87  UAAAGGCACC--GAGCUUAGCUAA-UUGGUGAGCAUUGAUCCCUGCUAUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCUGAG
+URS0000A9D72C_99883/8-83  UGAAGGCACA--GAGCUUAGCUAA-UUGGUGAGCAUUGAUCCCUGCUAUGUGUUGUUCACAGUGGCUAAGUUCAGUGCC----
+URS000075C69E_8090/11-90  UAAAGGCACA--GAGCUUAGCUAA-UUGGUGAGCAUUGAUCCCUGCUGUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCGGAG
+URS0000D549D0_8030/1-64   ---------A--GAGCUUAGCUAA-UUGGUGAGCAUUGAUCCCUCUUAUGUGUUGUUCACAGUGGCUAAGUUCAGU-------
+URS0000D5543A_8030/1-64   ---------A--GAGCUUAGCUAA-UUGGUGAGCAUUGAUCCCUCUUAUAUGUUGUUCACAGUGGCUAAGUUCAGU-------
+URS0000A91A5F_7757/1-75   -UCCGGUGAA--GGGCUUAACCCA-CCUGUGAGCAGCGCUUUACGAUA---AGUGUUCACAGUGGCUAAGUUCUGCAUCUGU-
+URS000075D3F6_7955/6-83   UGUGGUGUCA--GGACUUAACCCA-CUUGUGAACAAUGCAUCGAACU--UCAAUGUUCACAGUGGUUAAGUUCUGCCGCCCCU
+URS0000D507CD_7998/1-60   ------------GGACUUAACCCA-CUUGUGAACAAUGCAUCGAACU--UCAAUGUUCACAGUGGUUAAGUUCUG--------
+URS0000D5440B_7962/15-92  UGUGGUGUCA--GGACUUAACCCA-CUUGUGAACACUGCAU--UGAACUUCUUUGUUCACAGUGGUUAAGUUCUGCCAUCCUG
+URS0000D51F85_8030/1-62   ---------A--GGACUUAGCACA-CAUGUGAACACUGUAAGUUUACCUC-CAUGUUCACAGUGGUUAAGUUCUG--------
+URS000075C03C_31033/6-78  UGUGGCGGCA--GGACUUAACCCA-CAUGUGAGCAGUGAGUGUGU----GCCAUGUUCACAGUGGUUAAGUUCUGCCGCC---
+URS0000A9EF56_99883/6-76  UGCGGCGGCA--GGACUUAACCCA-CAUGUGAACAGUGAGUGU------GCCGUGUUCACAGUGGUUAAGUUCUGCCGCC---
+URS000075BC10_8090/16-91  UGCGGCAGCA--GGACUUAGCCCA-CAUGUGAACAGUGAGUGUAU----GCCAUGUUCACAGUGGUUAAGUUCUGCCGCCACA
+URS00007E49E5_28377/1-73  ---AGCCGUA--GGGCUUAGCCCA-CCUGUGAACAGCAUUGGAUUCAG--CCAUGUUCACAGUGGCUAAGUUCCGCUGCUU--
+URS0000D4FA7E_8665/1-71   -----GGGCA--GGGCUUAGCUCA-CUUGUGAACAGCGUUUGAUUCAG--CCAUGUUCACAGUGGCUAAGUUCCGCCUCUU--
+URS0000AAA349_9600/1-80   CUGAGGAGCACGGGGCUUAGCUG--CUUGUGAGCAGGGUCCACACCAAG-UUGUGUUCACAGUGGCUAAGUUCCGCCCCCCAG
+#=GC SS_cons              ::::::::::..<<<<<<<<<<--.---<<<<<<<__________________>>>>>>>--->>>>>>>>>>::::::::::
+#=GC RF                   uugaGGuGCA..GggCUUAGCugA.uUuGUGAaCAguGauugauuuaauuuuuUGuUCACAGUgGCUAAGuuCuGCacCugaa
+//

raw_data/life/L020/0007-RF00266.stockholm ADDED Viewed

	@@ -0,0 +1,62 @@

+# STOCKHOLM 1.0
+#=GF ID snoZ17
+#=GF AC RF00266
+#=GF DE Small nucleolar RNA Z17
+#=GF AU Moxon SJ; 0000-0003-4644-1816
+#=GF GA 44.0
+#=GF NC 43.9
+#=GF TC 44.1
+#=GF SE http://ribosome.miyazaki-med.ac.jp/, INFERNAL
+#=GF SS Predicted; PFOLD
+#=GF TP Gene; snRNA; snoRNA; CD-box;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 21.00 -Z 2958934 CM SEQDB
+#=GF CL CL00053
+#=GF DR GO; 0006396; RNA processing;
+#=GF DR GO; 0005730; nucleolus;
+#=GF DR snoopy; Mus_musculus300938;
+#=GF DR snoopy; Loxodonta_africana300514;
+#=GF DR SO; 0000593; C_D_box_snoRNA;
+#=GF RN [1]
+#=GF RM 12215523
+#=GF RT Purified box C/D snoRNPs are able to reproduce site-specific
+#=GF RT 2'-O-methylation of target RNA in vitro.
+#=GF RA Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I
+#=GF RL Mol Cell Biol 2002;22:6663-6668.
+#=GF CC Z17 is a member of the C/D class of snoRNA which contain the C (UGAUGA)
+#=GF CC and D (CUGA) box motifs. Most of the members of the box C/D family
+#=GF CC function in directing site-specific 2'-O-methylation of substrate RNAs
+#=GF CC [1].
+#=GF WK Small_nucleolar_RNA_Z17
+#=GF SQ 26
+AJ224024.1/1-72            GGUGCAGAUGAUGAC-ACUGUAAAGCGACCAAAGUCUGAACAAAG-UGAUUGGU-ACCUCGUUGUCUGA-UGCACC
+AF001689.1/2296-2367       GGUGCAGAUGAUGAC-ACUGUAAAGCGACCAAAGUCUGAACAAAG-UGAUUGGU-ACCUCGUUGUCUGA-UGCACC
+AF001689.1/3399-3470       GGUGCAAAUGAUGCA-UAUGUUA-GCGACCAAAGCCUGAUCUUUGCUGAUUAGU--CAUAAUUAACUGACUGCACC
+AJ224025.1/2-73            GGUGCAAAUGAUGCA-UAUGUUA-GCGACCAAAGCCUGAUCUUUGCUGAUUAGU--CAUAAUUAACUGACUGCACC
+ABDC01347295.1/8749-8820   GGUGCAAAUGAUGAC-ACUGUAAAGCGACCAAAGUCUGACCAAAA-UGAUUUCU-ACCUCAUUAUCUGA-UGCACC
+AANN01481002.1/718-646     GGUGCAAAUGAUGAU-UCUGUAUAGCGACCAAAGUCUGAGAAAGGCUGAUUUCU-AUCUCAUUGUCUGA-UGCACC
+AANU01205354.1/3441-3512   GGUGCAGGUGAUGAC-ACUGUAAAACGACCAAAGUCUGAACAAAA-UGAUUGGU-ACCUCGUUGUCUGA-UGCCCU
+AAYZ01187588.1/1075-1145   GGUGCACAUGAUGAC-AUUAUUUAGCGACCAAAGUCUGAUGAAGA-UGAUUGCA--CCUCAUUGUCUGA-UGCACC
+AAPY01743681.1/8244-8314   GGUGCAAAUGAUGAC-AUUAUUCAGCGACCAAAGUCUGACAGAAA-UGAUUGCU--UCUCAAUGUCUGA-UGCACC
+AALT01536072.1/657-587     GGUGCAAAUGAUGAC-ACUAUUAAGCGACCAAAGUCUGACAAAAG-UGAUUGCU--ACUCAGUGUCUGA-UGCAAC
+AAQQ01709973.1/1321-1391   GGUGCAGCUGAUGAC-AGCAUUUAGCGACCAAAGUCUGAUGAAAC-UGAUUGCU--ACUUAUUGUCUGA-UGCACC
+AAHY01094589.1/16207-16137 GGUGCAUGUGAUGAC-AUUAUUUAGCGACCAAAGUCUGAUAAAGA-UGAUUGUG--AUCUAUUGUCUGA-UGCACC
+AAFR03044819.1/3240-3311   GGUGCAGAUGAUGAU-AUCUAUA-GCGACCAAAGUCUGAGUAAAA-UGAUAGGCAACUUCAGUGUCUGA-UGCACC
+AAPN01416195.1/1477-1545   GGUGCAGAUGAUGAC-AUCACA--GCGACCAAAGCCUGAGUAAA--UGAUUGCA-ACCUCACUGGCUGA-UGCACC
+AAIY01565342.1/752-821     GGUGCAAAUGAUGACAUCUAUUCAGCGACCAAAGUCUGAUCAAAA-UGAUUGCU-AUUUAGU---CUGA-UGCACU
+AAGV020173148.1/4127-4193  GGUGCAAAUGCUGCA-CC-GUUA-GUGACCAAAGCCUGACUUUAGAUGAUUAGU------CUUAACUGACUGCACC
+AAKN02033341.1/2087-2018   GGUGCAAAUGAUGAA-UCUGUUA-GCGACCAAAGCCUGACUUC--CUGAUUAGU--CACAACUGACUGACUGCACC
+AAWR02013172.1/62940-63011 GGUGCAAAUGAUGUG-UAUGUUA-GCGACCAAAGCCUGACCUUUGCUGAUUAGG--CCUAACUGACUGACUGUACC
+AAHX01064981.1/3059-2989   GGUGCAUAUGAUGAC-AUUAUUUAGCGACCAAAGUCUGAUGCAGA-UGAUUGCA--GUCUAUUGUCUGA-UGCACC
+AAPE02030647.1/4780-4852   GGUGCAAAUGAUGUG-UCUUAUUAGCGACCAAAGCCUGACUUUUGCUGAUUAGU--CUUAACUGACUGACUGCACC
+AAGU03065331.1/66667-66738 GGUGCAGAUGAUGCC-UCUGUUA-GUGACCAAAGCCUGAUGUUUGGUGAUGAGU--CUUAACUGACUGACUGCACC
+AAEX03006669.1/8655-8726   GGUGCAGAUGAUGAC-ACUGUUUAGCGACCAAAGUCUGACAAAAA-UGAUUGCU-ACUUCAUUGUCUGA-UGCACC
+AAGW02049846.1/3359-3288   GGUGCACGUGAUGAC-AUUGUUAAGCGACCAAAGUCUGAUAAAGA-UGAUUGCU-ACCUCAUGGUCUGA-UGCACC
+AJ010678.1/1-71            GGUGCAUGUGAUGAC-AUUAUUUAGCGACCAAAGUCUGAUAAAGA-UGAUUGUG--AUCUAUUGUCUGA-UGCACC
+EU094074.1/4-72            GGUGCAGAUGAUGAC-AUCAC--AGCGACCAAAGCCUGAGUAAA--UGAUUGCA-ACCUCACUGGCUGA-UGCACC
+EU094073.1/3-71            GAUGCAAAUGAUGAA-CC---GUAGUGACCAAAGCCUGAACCUUGGUGAUGAAG--CUUGACCACGUGA-UGCAUC
+#=GC SS_cons               <<<<<<_________._____________________________.________.._____________.>>>>>>
+#=GC RF                    GGUGCAaAUGAUGAc.acUgUuaAGCGACCAAAGuCUGAuuaaaa.UGAUUggu..cuUcAuUGuCUGA.UGCACC
+//

raw_data/life/L020/0008-RF00054.stockholm ADDED Viewed

	@@ -0,0 +1,55 @@

+# STOCKHOLM 1.0
+#=GF ID SNORD25
+#=GF AC RF00054
+#=GF DE Small nucleolar RNA SNORD25
+#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
+#=GF GA 39.0
+#=GF NC 38.9
+#=GF TC 39.0
+#=GF PI U25
+#=GF SE Griffiths-Jones SR
+#=GF SS Predicted; PFOLD
+#=GF TP Gene; snRNA; snoRNA; CD-box;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.09 -Z 2958934 CM SEQDB
+#=GF CL CL00049
+#=GF DR SO; 0000593; C_D_box_snoRNA;
+#=GF DR GO; 0006396; RNA processing;
+#=GF DR GO; 0005730; nucleolus;
+#=GF DR snoopy; Mus_musculus300709;
+#=GF DR snoopy; Homo_sapiens300169;
+#=GF RN [1]
+#=GF RM 11266566
+#=GF RT Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana.
+#=GF RA Qu LH, Meng Q, Zhou H, Chen YQ, Liang-Hu Q, Qing M, Hui Z, Yue-Qin C
+#=GF RL Nucleic Acids Res 2001;29:1623-1630.
+#=GF RN [2]
+#=GF RM 8559254
+#=GF RT A mammalian gene with introns instead of exons generating stable RNA
+#=GF RT products.
+#=GF RA Tycowski KT, Shu MD, Steitz JA
+#=GF RL Nature 1996;379:464-466.
+#=GF CC U25 is a member of the C/D class of snoRNA which contain the C (UGAUGA)
+#=GF CC and D (CUGA) box motifs. U25 is found in gene clusters in plants [1], and
+#=GF CC within the U22 snoRNA host gene (UHG) in mammals [2]. U25 is thought to as
+#=GF CC a 2'-O-ribose methylation guide for ribosomal RNA. This RNA has also been
+#=GF CC named snoRNA R73 in some plants.
+#=GF WK Small_nucleolar_RNA_SNORD25
+#=GF SQ 12
+U40654.1/666-735       --CCCCUAUGAUGAGGACC-UUUUCACAGACCUGUA--------CUGAUAUAU----------CUGUGAGGAUAAGUAACUCUGAGGAGGC
+U40580.1/750-817       --UUCCUAUGAUGAGGACC-UUUUCACAGACCUGUA--------CUGAGCU------------CCGUGAGGAUAAAUAACUCUGAGGAGAU
+L36587.1/100-167       --UUCCUAUGAUGAGGACC-UUUUCACAGACCUGUA--------CUGAGCU------------CCGUGAGGAUAAGUAACUCUGAGGAGAU
+AL662969.3/86874-86961 CAUGGCGGUCUUGAGC-CC--UAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC
+AL662969.3/87797-87884 GGCAACAGUGAUGAGU-CC--UUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC
+AJ276573.1/1-85        AAGAACAGUGAUGAGU-CAGUUUACAGACCUGUAAUGA---UUGCGGUAAUGAUCGCAUUA--UUAUGAACAUCUAAGGGACUGAGUUCUU
+AL662969.3/87631-87717 UUUGACGGUGAUUAGC-CC--UAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAU-CAAAGAACAUCUAAGGGACUGAGUAAUA
+AL662969.3/86448-86535 UGUGGCAGUGAUGAGC-CC--UAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGUC
+AY103180.1/27-114      CAUGGCGGUCUUGAGC-CC--UAACAGACCUGAAAUAAUUAUUGCGGAUAUGAUUGCUUAAUUCAGAGCACAUCUAAGGGACUGAGUUGCC
+AJ532527.1/1-87        UUUGACGGUGAUUAGC-CC--UAACAGACCUGUAAUGAUUCUUGCGGAUACGAUCGCUUGAU-CAAAGAACAUCUAAGGGACUGAGUAAUA
+AJ532528.1/4-91        GGCAACAGUGAUGAGU-CC--UUACAGACCUGUAAUGAUUCUUGCGGGAAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUAUC
+AJ532526.1/1-86        -GUGGCAGUGAUGAGC-CC--UAACAGACCUGUAAUGAUUCUUGUGUAUAUGAUCGCUUGAUUCAAAGAACAUCUAAGGGACUGAGUUGU-
+#=GC SS_cons           :<<<<<__________.__.._________________________________________.______________________>>>>>:
+#=GC RF                ugcucCaGUGAUGAGc.CC..UuACAGAccUGUAAUGAUUcUUGCGGAuAUGAUCGCUUgAU.CaaaGAAcAUcUAAGGGACUGAGgagcc
+//

raw_data/life/L020/0009-RF00129.stockholm ADDED Viewed

	@@ -0,0 +1,143 @@

+# STOCKHOLM 1.0
+#=GF ID mir-103
+#=GF AC RF00129
+#=GF DE mir-103/107 microRNA precursor
+#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
+#=GF GA 59.6
+#=GF NC 51.7
+#=GF TC 59.9
+#=GF SE Griffiths-Jones SR, INFERNAL
+#=GF SS Predicted; RNAalifold
+#=GF TP Gene; miRNA;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
+#=GF DR SO; 0001244; pre_miRNA;
+#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
+#=GF DR GO; 0016442; RISC complex;
+#=GF DR MIPF; MIPF0000024;
+#=GF DR URL; http://www.mirbase.org;
+#=GF RN [1]
+#=GF RM 11914277
+#=GF RT miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.
+#=GF RA Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L,
+#=GF RA Rappsilber J, Mann M, Dreyfuss G
+#=GF RL Genes Dev 2002;16:720-728.
+#=GF RN [2]
+#=GF RM 11779458
+#=GF RT microRNAs: tiny regulators with great potential.
+#=GF RA Ambros V
+#=GF RL Cell 2001;107:823-826.
+#=GF RN [3]
+#=GF RM 30423142
+#=GF RT miRBase: from microRNA sequences to function.
+#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
+#=GF RL Nucleic Acids Res. 2019;47:D155.
+#=GF CC This family consists of the mammalian microRNA (miRNA) precursors mir-103
+#=GF CC and mir107. Animal miRNAs are transcribed as ~70nt precursors and
+#=GF CC subsequently processed by the Dicer enzyme to give a ~22nt product. In
+#=GF CC this case the mature sequence comes from the 3' arm of the precursor. The
+#=GF CC extents of the hairpin precursors are not generally known and are
+#=GF CC estimated based on hairpin prediction. The products are thought to have
+#=GF CC regulatory roles through complementarity to mRNA. The involvement of Dicer
+#=GF CC in miRNA processing suggests a relationship with the phenomenon of RNA
+#=GF CC interference. miRNAs are numbered based on the sequence of the mature RNA.
+#=GF WK Mir-103/107_microRNA_precursor
+#=GF SQ 93
+URS000075BB36_31033/3-80   CUCCGCUUUUAGCCUCUUUACAGUGCUGCCUUG-UC--UAAUCAUGU-UCAAGCAGCAUUGUACAGGGCUAUGACAGCGUAG
+URS0000A8E2B9_99883/6-84   CUACGCUUUUAGCCUCUUUACAGUGCUGCCUUGCUC--UACUCAUGU-UCAAGCAGCAUUGUACAGGGCUAUGACAGCGUAG
+URS000075C728_7955/6-83    CUGGUCUGUCAGCCUCUUUACGGUGCUGCCUUGUG--GAAUCUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAGAGACCCG
+URS0000A7AE49_7998/1-60    ----------AGCCUCUUUACGGUGCUGCCUUGUG--GAAUCUGGAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS000075A419_8090/13-90   CUCUGCCUUCAGCCUCUUUAUGAUGCUGCCUUGUG--GCGUCUUGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCGUGG
+URS0000D51A58_8030/1-60    ----------AGCCUCUUUAUGAUGCUGCCUUGUG--GAAUCUGGAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS00007E4D57_31033/3-76   CCCUGCUCUCAGCCUCUUUACGGUGCUGCCUUGUG--GCAUCUUGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGC----
+URS0000A85808_7757/2-83    CGCUCCUUUCAGCCUCUCUAUGGUGCUGCCUUGUGUCAAACCUGCGUGUCAAGCAGCAUCGUACAGGGCUUGGAAAGUGUCG
+URS000075AC7F_10090/5-82   UCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS000075AC7F_10116/5-82   UCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS000075C5B8_10029/1-78   UCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS0000D4F4C3_29078/3-80   UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS00006A459C_9796/1-78    UCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS0000302909_9606/1-78    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS0000302909_9544/1-78    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS0000302909_9600/1-78    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS000075ECE7_9598/1-77    -UGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS000075BE62_9823/1-77    -UGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACUA
+URS00007E3F70_9925/5-82    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACUA
+URS00007E33FB_9615/1-77    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACC-
+URS000075BB07_9913/1-76    UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCAGGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAAC--
+URS00007E482B_246437/1-60  ----------AGCUUCUUUACAGUGCUGCCUUGUA--GCAUUCGGGU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS000075CDC5_13616/3-80   UGGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUU--GCAUUGAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS000075C28F_9258/16-93   UGGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUU--GCAUUCAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACCA
+URS0000D5028D_8665/3-80    GGGUGCUUCCAGCUUCUUUACAGUGCUGCCUUGUU--GCAACCAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGACCCC
+URS000075CB1A_59729/1-71   -------UUCAGCUUCUUUACAGUGCUGCCUUGUU--GCAUUCAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAGCAG
+URS000075E418_9031/4-81    CUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUU--GCGUUCAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAAGAACAG
+URS000075E6DF_8364/3-80    CUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUA--GCAUCUAUGU--CAAGCAGCAUUGUACAGGGCUAUGAAGGAGCAG
+URS000075B56F_8364/1-73    --CUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCA---
+URS000075EFD2_13616/6-83   UUCUGCUUUCGGCUUCUCUACAGUGUUGCCUUGUG--GCGUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCAUAG
+URS0000D55FFB_29078/3-80   CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9606/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9544/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9598/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9593/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9600/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9519/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9545/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9597/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9913/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9940/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000075EC99_9823/5-82    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000075EC99_9925/5-82    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000008F0CF_9796/3-80    CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000075D9F7_10029/3-80   CUCUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAAUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACUG
+URS000075E2AC_10116/5-82   CUCUGCUUUAAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000075DC2E_10090/5-82   CUGUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCACAG
+URS000075E2E1_9031/3-80    CUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCAUGG
+URS000075E26E_59729/1-71   -------UUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCAUGG
+URS000075CD0A_9258/6-83    CUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCCUAG
+URS0000D557F6_8665/3-79    CUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCAUA-
+URS00007E38AD_246437/1-58  ----------AGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAU----------
+URS00007E4368_28377/6-83   CUUUGCUUUCAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAUCAAAGCGCAG
+URS00007E38AD_9615/1-58    ----------AGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGUU--CAAGCAGCAUUGUACAGGGCUAU----------
+URS000075DF9C_7955/4-81    GUGUGCUCUGAGCUUCUUUACAGUGUUGUCUUGUG--GCAUGGAGAU--CAAGCAGCAUUGUACAGGGCUAUCACAGCACAC
+URS0000D561E9_7962/6-83    GUGUGCUCUGAGCUUCUUUACAGUGUUGUCUUGUG--GCAUGGAGAU--CAAGCAGCAUUGUACAGGGCUAUCACAGCACAC
+URS0000D5441D_7998/1-59    ----------AGCUUCUUUACAGUGUUGUCUUGUG--GCAUGGAGAU--CAAGCAGCAUUGUACAGGGCUAUC---------
+URS0000AA9FDA_99883/4-81   GUCUGCUGUGAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGCGAU--CAAGCAGCAUUGUACAGGGCUAUCACCGCACAC
+URS000075B984_8090/14-91   GUGUGCUGUGAGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGCGAU--CAAGCAGCAUUGUACAGGGCUAUCACUGCAUGC
+URS000075A051_7955/4-81    GGCCACUCUGGGCUUCUCUACAGUGUUGCCUUGUA--GCCUGGUGAU--CAAGCAGCAUUGUACAGGGCUUUCAGCGUGUAC
+URS0000D569D8_7998/1-54    ------------CUUCUCUACAGUGUUGCCUUGUA--GCCUGGUGAU--CAAGCAGCAUUGUACAGGGCU------------
+URS0000D53D71_8030/1-59    ----------AGCUUCUUUACAGUGUUGCCUUGUG--GCAUGGAGAU--CAAGCAGCAUUGUACAGGGCUAUC---------
+URS0000561D92_9606/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000D55791_29078/3-80   UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9509/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9593/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9597/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9600/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9598/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9544/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9519/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000561D92_9545/1-78    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS000075AEDD_59729/34-111 UACUGCCUUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS000075B775_10090/5-82   UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS000075B775_10116/5-82   UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS000075DAB3_9823/3-80    UACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCACUG
+URS000075EAB2_9913/1-72    --CUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGC----
+URS000067FD39_9031/1-78    UGCUGCCUUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCACUG
+URS000075B0DF_13616/1-76   --UUGUCUUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGACAUUG
+URS000075E079_9258/30-107  CCUUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAGGGCAUUG
+URS0000D52F90_8665/1-69    ------CUUUGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGACA---
+URS000075A815_8364/5-82    CAUUUCCUUUGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGAUCUG
+URS00007E351C_9615/1-62    --------UCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS00007E351C_246437/1-62  --------UCGGCUUCUUUACAGUGCUGCCUUGUU--GCAUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS00007E433B_28377/8-85   CGCUGCCUUCAGCUUCUUUACAGUGCUGCCUUGUU--GCUUAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGCAUUG
+URS0000759B53_9796/3-72    CACUGCCCUCGGCUUCUUUACAGUGCUGCCUUGUU--GCGGAUGGAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS000075C232_9940/1-72    --CUGCCCUCGGCUUCUCUACAGUGCUGCCUUGUC--GCAUGGGGAU--CAAGCAGCAUUGUACAGGGCUAUGAAGGC----
+URS0000AAD83F_7757/2-77    CUGUUCUCUCGGCCUCUUUACAGUGCUAUCUUGUA----GCCUCAAU--CAAGCAGCAUUGUACAGGGCUAUGAGAGAGCAA
+URS0000D4FB21_7962/5-82    CUGAGCUUUGAGCCUCUUUACAAUGCUGCCUUGUA--GACCCAGAAU--CAAGCAGCAUUGUACAGGGCUAUGAAAGCACAG
+URS0000A803AF_7998/1-62    --------UGAGCCUCUUUACAAUGCUGCCUUGUA--GACCCAGAAU--CAAGCAGCAUUGUACAGGGCUAUGA--------
+URS000075BEB2_8090/14-91   CUGCGCUUUUAGCCUCUUUACAGUGCUGCCUUGUCU--UCUCGCGUU--CAAGCAGCAUUGUACAGGGCUAUGACGGCGCAG
+URS000075ED36_9606/1-62    ------UCAUAGCC-CUGUACAAUGCUGCUUGAUCC-AUAUGCAACA---AGGCAGCACUGUAAAGAAGCCGA---------
+URS000075D426_9606/1-62    ------UCAUAGCC-CUGUACAAUGCUGCUUGACCU-GAAUGCUACA---AGGCAGCACUGUAAAGAAGCUGA---------
+#=GC SS_cons               :::::::::::::<<<<-<<<<<<<<<<-<<<<__..__________..>>>>>>>>>>>>>>->>>>::::::::::::::
+#=GC RF                    uucUGCUuUcAGCuUCUUUACAgUGCUGCCUUGUu..GcAUguagaU..CAAGCAGCAuUGUACAGGgCUAUgAAaGcacag
+//

raw_data/life/L020/L0020.fasta ADDED Viewed

	@@ -0,0 +1,24 @@

+>0000 URS0000DB0781 rRNA from 1 species
+GGGUGCGAUCAUACGAGCGUUAAUGCAUCGGAUCCCAUCCGAACUCCGCAAUUAAGCAGGCUUGGGCUAGAGUAGUACUG
+GGAUGGGUGACCUCCUGGGAAGUCCUAGUGUUGCACCCU
+>0001 URS000063B853 sRNA from 2 species
+UUAAUAACAUGAGAAGGGAUGAUGGGUGGACGAUGAUUAACUAAUCUUAUUUUUAACGUUUGAAAUUGAUAUUUCAAAUC
+AUACAAAAUAGGAUUAGUCUGCCCAUUUUCUAUAUACGUAAGCGCUAUUUCUGAAGAAUAGCUUAUUUGAUCAUGGCAAA
+GGCACGGCUAAUCCUUCCAAAACAUUUGGGAGGAUUUUUUG
+>0002 URS0000632E81 snoRNA from 4 species
+AAGGCAUGAUGAGGAUUGUUUAUUGUCAUCUGAUUUUCUGAUGAAUCAAUACCUCCUACUCAUUCUGA
+>0003 URS00007C08AA ncRNA from 12 species
+GUGAAAUUGAUCACAAACAAACAUUACCCCUUUGUUUGACCGUGAAAAAUUUCUCCCAUCCCCUUUGUUGUCGUUAAGAC
+AUAUGAAACCGCGCUUAUCCCGGCGCGGUUUCUUU
+>0004 URS000071BEE8 other from 1 species
+GUUUCCAUCCCCGUGAGGGGUAAGAGAUUAAAAAC
+>0005 URS0000D6C23B ncRNA from 2 species
+ACCGAGGGAGUGCCACACCAACGCGAGUAGCCCGCCAUCCCAGAUGGCUGCAAAAGCGGGCAUAAUGAACCGGUAA
+>0006 URS00007E40AF pre_miRNA from 11 species
+GGGCUUAGCUGCUUGUGAGCAGAGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCG
+>0007 URS0000692106 snoRNA from 5 species
+GGUGCAAAUGAUGCAUAUGUUAGCGACCAAAGCCUGAUCUUUGCUGAUUAGUCAUAAUUAACUGACUGCACC
+>0008 URS0002312AAE snoRNA from 1 species
+CCCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAUAUAUCUGUGAGGAUAAGUAACUCUGAGGAGGC
+>0009 URS0000A7AE49 pre_miRNA from 9 species
+AGCCUCUUUACGGUGCUGCCUUGUGGAAUCUGGAUCAAGCAGCAUUGUACAGGGCUAUGA

raw_data/material/M001/Ag2O.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_Ag2O
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.75399071
+_cell_length_b   4.75399071
+_cell_length_c   4.75399071
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Ag2O
+_chemical_formula_sum   'Ag4 O2'
+_cell_volume   107.44222319
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag+  1.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag+  Ag0  1  0.25000000  0.25000000  0.75000000  1
+  Ag+  Ag1  1  0.75000000  0.25000000  0.25000000  1
+  Ag+  Ag2  1  0.25000000  0.75000000  0.25000000  1
+  Ag+  Ag3  1  0.75000000  0.75000000  0.75000000  1
+  O2-  O4  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O5  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M001/AlN.cif ADDED Viewed

	@@ -0,0 +1,35 @@

+# generated using pymatgen
+data_AlN
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   3.12858814
+_cell_length_b   3.12858814
+_cell_length_c   5.01695500
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AlN
+_chemical_formula_sum   'Al2 N2'
+_cell_volume   42.52728185
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Al3+  3.0
+  N3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al3+  Al0  1  0.66666667  0.33333333  0.49928700  1
+  Al3+  Al1  1  0.33333333  0.66666667  0.99928700  1
+  N3-  N2  1  0.66666667  0.33333333  0.88071300  1
+  N3-  N3  1  0.33333333  0.66666667  0.38071300  1

raw_data/material/M001/BAs.cif ADDED Viewed

	@@ -0,0 +1,128 @@

+# generated using pymatgen
+data_BAs
+_symmetry_space_group_name_H-M   F-43m
+_cell_length_a   4.81925400
+_cell_length_b   4.81925400
+_cell_length_c   4.81925400
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   216
+_chemical_formula_structural   BAs
+_chemical_formula_sum   'B4 As4'
+_cell_volume   111.92818194
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+  2  'y, -x, -z'
+  3  '-x, -y, z'
+  4  '-y, x, -z'
+  5  'x, -y, -z'
+  6  'y, x, z'
+  7  '-x, y, -z'
+  8  '-y, -x, z'
+  9  'z, x, y'
+  10  '-z, y, -x'
+  11  'z, -x, -y'
+  12  '-z, -y, x'
+  13  '-z, x, -y'
+  14  'z, y, x'
+  15  '-z, -x, y'
+  16  'z, -y, -x'
+  17  'y, z, x'
+  18  '-x, -z, y'
+  19  '-y, z, -x'
+  20  'x, -z, -y'
+  21  '-y, -z, x'
+  22  'x, z, y'
+  23  'y, -z, -x'
+  24  '-x, z, -y'
+  25  'x+1/2, y+1/2, z'
+  26  'y+1/2, -x+1/2, -z'
+  27  '-x+1/2, -y+1/2, z'
+  28  '-y+1/2, x+1/2, -z'
+  29  'x+1/2, -y+1/2, -z'
+  30  'y+1/2, x+1/2, z'
+  31  '-x+1/2, y+1/2, -z'
+  32  '-y+1/2, -x+1/2, z'
+  33  'z+1/2, x+1/2, y'
+  34  '-z+1/2, y+1/2, -x'
+  35  'z+1/2, -x+1/2, -y'
+  36  '-z+1/2, -y+1/2, x'
+  37  '-z+1/2, x+1/2, -y'
+  38  'z+1/2, y+1/2, x'
+  39  '-z+1/2, -x+1/2, y'
+  40  'z+1/2, -y+1/2, -x'
+  41  'y+1/2, z+1/2, x'
+  42  '-x+1/2, -z+1/2, y'
+  43  '-y+1/2, z+1/2, -x'
+  44  'x+1/2, -z+1/2, -y'
+  45  '-y+1/2, -z+1/2, x'
+  46  'x+1/2, z+1/2, y'
+  47  'y+1/2, -z+1/2, -x'
+  48  '-x+1/2, z+1/2, -y'
+  49  'x+1/2, y, z+1/2'
+  50  'y+1/2, -x, -z+1/2'
+  51  '-x+1/2, -y, z+1/2'
+  52  '-y+1/2, x, -z+1/2'
+  53  'x+1/2, -y, -z+1/2'
+  54  'y+1/2, x, z+1/2'
+  55  '-x+1/2, y, -z+1/2'
+  56  '-y+1/2, -x, z+1/2'
+  57  'z+1/2, x, y+1/2'
+  58  '-z+1/2, y, -x+1/2'
+  59  'z+1/2, -x, -y+1/2'
+  60  '-z+1/2, -y, x+1/2'
+  61  '-z+1/2, x, -y+1/2'
+  62  'z+1/2, y, x+1/2'
+  63  '-z+1/2, -x, y+1/2'
+  64  'z+1/2, -y, -x+1/2'
+  65  'y+1/2, z, x+1/2'
+  66  '-x+1/2, -z, y+1/2'
+  67  '-y+1/2, z, -x+1/2'
+  68  'x+1/2, -z, -y+1/2'
+  69  '-y+1/2, -z, x+1/2'
+  70  'x+1/2, z, y+1/2'
+  71  'y+1/2, -z, -x+1/2'
+  72  '-x+1/2, z, -y+1/2'
+  73  'x, y+1/2, z+1/2'
+  74  'y, -x+1/2, -z+1/2'
+  75  '-x, -y+1/2, z+1/2'
+  76  '-y, x+1/2, -z+1/2'
+  77  'x, -y+1/2, -z+1/2'
+  78  'y, x+1/2, z+1/2'
+  79  '-x, y+1/2, -z+1/2'
+  80  '-y, -x+1/2, z+1/2'
+  81  'z, x+1/2, y+1/2'
+  82  '-z, y+1/2, -x+1/2'
+  83  'z, -x+1/2, -y+1/2'
+  84  '-z, -y+1/2, x+1/2'
+  85  '-z, x+1/2, -y+1/2'
+  86  'z, y+1/2, x+1/2'
+  87  '-z, -x+1/2, y+1/2'
+  88  'z, -y+1/2, -x+1/2'
+  89  'y, z+1/2, x+1/2'
+  90  '-x, -z+1/2, y+1/2'
+  91  '-y, z+1/2, -x+1/2'
+  92  'x, -z+1/2, -y+1/2'
+  93  '-y, -z+1/2, x+1/2'
+  94  'x, z+1/2, y+1/2'
+  95  'y, -z+1/2, -x+1/2'
+  96  '-x, z+1/2, -y+1/2'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  As3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  4  0.25000000  0.25000000  0.25000000  1
+  As3-  As1  4  0.00000000  0.00000000  0.00000000  1

raw_data/material/M002/Ag2O.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_Ag2O
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.75399071
+_cell_length_b   4.75399071
+_cell_length_c   4.75399071
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Ag2O
+_chemical_formula_sum   'Ag4 O2'
+_cell_volume   107.44222319
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag+  1.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag+  Ag0  1  0.25000000  0.25000000  0.75000000  1
+  Ag+  Ag1  1  0.75000000  0.25000000  0.25000000  1
+  Ag+  Ag2  1  0.25000000  0.75000000  0.25000000  1
+  Ag+  Ag3  1  0.75000000  0.75000000  0.75000000  1
+  O2-  O4  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O5  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M002/AgF2.cif ADDED Viewed

	@@ -0,0 +1,43 @@

+# generated using pymatgen
+data_AgF2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   5.15029714
+_cell_length_b   5.61804978
+_cell_length_c   5.73745983
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AgF2
+_chemical_formula_sum   'Ag4 F8'
+_cell_volume   166.01125277
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag2+  2.0
+  F-  -1.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag2+  Ag0  1  0.50000000  0.00000000  0.50000000  1
+  Ag2+  Ag1  1  0.00000000  0.50000000  0.50000000  1
+  Ag2+  Ag2  1  0.50000000  0.50000000  0.00000000  1
+  Ag2+  Ag3  1  0.00000000  0.00000000  0.00000000  1
+  F-  F4  1  0.68411866  0.30511619  0.62873397  1
+  F-  F5  1  0.18411866  0.19488381  0.37126603  1
+  F-  F6  1  0.31588134  0.80511619  0.87126603  1
+  F-  F7  1  0.81588134  0.69488381  0.12873397  1
+  F-  F8  1  0.18411866  0.30511619  0.87126603  1
+  F-  F9  1  0.68411866  0.19488381  0.12873397  1
+  F-  F10  1  0.81588134  0.80511619  0.62873397  1
+  F-  F11  1  0.31588134  0.69488381  0.37126603  1

raw_data/material/M002/Al3Ir.cif ADDED Viewed

	@@ -0,0 +1,34 @@

+# generated using pymatgen
+data_Al3Ir
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.27012567
+_cell_length_b   4.27012567
+_cell_length_c   7.74077817
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Al3Ir
+_chemical_formula_sum   'Al6 Ir2'
+_cell_volume   122.23527844
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al  Al0  1  0.00000000  0.00000000  0.25000000  1
+  Al  Al1  1  0.00000000  0.00000000  0.75000000  1
+  Al  Al2  1  0.33333333  0.66666667  0.57989058  1
+  Al  Al3  1  0.66666667  0.33333333  0.07989058  1
+  Al  Al4  1  0.66666667  0.33333333  0.42010942  1
+  Al  Al5  1  0.33333333  0.66666667  0.92010942  1
+  Ir  Ir6  1  0.33333333  0.66666667  0.25000000  1
+  Ir  Ir7  1  0.66666667  0.33333333  0.75000000  1

raw_data/material/M002/AlN.cif ADDED Viewed

	@@ -0,0 +1,35 @@

+# generated using pymatgen
+data_AlN
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   3.12858814
+_cell_length_b   3.12858814
+_cell_length_c   5.01695500
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AlN
+_chemical_formula_sum   'Al2 N2'
+_cell_volume   42.52728185
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Al3+  3.0
+  N3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al3+  Al0  1  0.66666667  0.33333333  0.49928700  1
+  Al3+  Al1  1  0.33333333  0.66666667  0.99928700  1
+  N3-  N2  1  0.66666667  0.33333333  0.88071300  1
+  N3-  N3  1  0.33333333  0.66666667  0.38071300  1

raw_data/material/M002/BAs.cif ADDED Viewed

	@@ -0,0 +1,128 @@

+# generated using pymatgen
+data_BAs
+_symmetry_space_group_name_H-M   F-43m
+_cell_length_a   4.81925400
+_cell_length_b   4.81925400
+_cell_length_c   4.81925400
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   216
+_chemical_formula_structural   BAs
+_chemical_formula_sum   'B4 As4'
+_cell_volume   111.92818194
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+  2  'y, -x, -z'
+  3  '-x, -y, z'
+  4  '-y, x, -z'
+  5  'x, -y, -z'
+  6  'y, x, z'
+  7  '-x, y, -z'
+  8  '-y, -x, z'
+  9  'z, x, y'
+  10  '-z, y, -x'
+  11  'z, -x, -y'
+  12  '-z, -y, x'
+  13  '-z, x, -y'
+  14  'z, y, x'
+  15  '-z, -x, y'
+  16  'z, -y, -x'
+  17  'y, z, x'
+  18  '-x, -z, y'
+  19  '-y, z, -x'
+  20  'x, -z, -y'
+  21  '-y, -z, x'
+  22  'x, z, y'
+  23  'y, -z, -x'
+  24  '-x, z, -y'
+  25  'x+1/2, y+1/2, z'
+  26  'y+1/2, -x+1/2, -z'
+  27  '-x+1/2, -y+1/2, z'
+  28  '-y+1/2, x+1/2, -z'
+  29  'x+1/2, -y+1/2, -z'
+  30  'y+1/2, x+1/2, z'
+  31  '-x+1/2, y+1/2, -z'
+  32  '-y+1/2, -x+1/2, z'
+  33  'z+1/2, x+1/2, y'
+  34  '-z+1/2, y+1/2, -x'
+  35  'z+1/2, -x+1/2, -y'
+  36  '-z+1/2, -y+1/2, x'
+  37  '-z+1/2, x+1/2, -y'
+  38  'z+1/2, y+1/2, x'
+  39  '-z+1/2, -x+1/2, y'
+  40  'z+1/2, -y+1/2, -x'
+  41  'y+1/2, z+1/2, x'
+  42  '-x+1/2, -z+1/2, y'
+  43  '-y+1/2, z+1/2, -x'
+  44  'x+1/2, -z+1/2, -y'
+  45  '-y+1/2, -z+1/2, x'
+  46  'x+1/2, z+1/2, y'
+  47  'y+1/2, -z+1/2, -x'
+  48  '-x+1/2, z+1/2, -y'
+  49  'x+1/2, y, z+1/2'
+  50  'y+1/2, -x, -z+1/2'
+  51  '-x+1/2, -y, z+1/2'
+  52  '-y+1/2, x, -z+1/2'
+  53  'x+1/2, -y, -z+1/2'
+  54  'y+1/2, x, z+1/2'
+  55  '-x+1/2, y, -z+1/2'
+  56  '-y+1/2, -x, z+1/2'
+  57  'z+1/2, x, y+1/2'
+  58  '-z+1/2, y, -x+1/2'
+  59  'z+1/2, -x, -y+1/2'
+  60  '-z+1/2, -y, x+1/2'
+  61  '-z+1/2, x, -y+1/2'
+  62  'z+1/2, y, x+1/2'
+  63  '-z+1/2, -x, y+1/2'
+  64  'z+1/2, -y, -x+1/2'
+  65  'y+1/2, z, x+1/2'
+  66  '-x+1/2, -z, y+1/2'
+  67  '-y+1/2, z, -x+1/2'
+  68  'x+1/2, -z, -y+1/2'
+  69  '-y+1/2, -z, x+1/2'
+  70  'x+1/2, z, y+1/2'
+  71  'y+1/2, -z, -x+1/2'
+  72  '-x+1/2, z, -y+1/2'
+  73  'x, y+1/2, z+1/2'
+  74  'y, -x+1/2, -z+1/2'
+  75  '-x, -y+1/2, z+1/2'
+  76  '-y, x+1/2, -z+1/2'
+  77  'x, -y+1/2, -z+1/2'
+  78  'y, x+1/2, z+1/2'
+  79  '-x, y+1/2, -z+1/2'
+  80  '-y, -x+1/2, z+1/2'
+  81  'z, x+1/2, y+1/2'
+  82  '-z, y+1/2, -x+1/2'
+  83  'z, -x+1/2, -y+1/2'
+  84  '-z, -y+1/2, x+1/2'
+  85  '-z, x+1/2, -y+1/2'
+  86  'z, y+1/2, x+1/2'
+  87  '-z, -x+1/2, y+1/2'
+  88  'z, -y+1/2, -x+1/2'
+  89  'y, z+1/2, x+1/2'
+  90  '-x, -z+1/2, y+1/2'
+  91  '-y, z+1/2, -x+1/2'
+  92  'x, -z+1/2, -y+1/2'
+  93  '-y, -z+1/2, x+1/2'
+  94  'x, z+1/2, y+1/2'
+  95  'y, -z+1/2, -x+1/2'
+  96  '-x, z+1/2, -y+1/2'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  As3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  4  0.25000000  0.25000000  0.25000000  1
+  As3-  As1  4  0.00000000  0.00000000  0.00000000  1

raw_data/material/M002/BP.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BP
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.53214477
+_cell_length_b   4.53214477
+_cell_length_c   4.53214477
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BP
+_chemical_formula_sum   'B4 P4'
+_cell_volume   93.09177730
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  P3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  1  0.00000000  0.00000000  0.00000000  1
+  B3+  B1  1  0.00000000  0.50000000  0.50000000  1
+  B3+  B2  1  0.50000000  0.00000000  0.50000000  1
+  B3+  B3  1  0.50000000  0.50000000  0.00000000  1
+  P3-  P4  1  0.25000000  0.75000000  0.75000000  1
+  P3-  P5  1  0.25000000  0.25000000  0.25000000  1
+  P3-  P6  1  0.75000000  0.75000000  0.25000000  1
+  P3-  P7  1  0.75000000  0.25000000  0.75000000  1

raw_data/material/M002/BaTe.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BaTe
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   7.08983954
+_cell_length_b   7.08983954
+_cell_length_c   7.08983954
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BaTe
+_chemical_formula_sum   'Ba4 Te4'
+_cell_volume   356.37663148
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ba2+  2.0
+  Te2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ba2+  Ba0  1  0.00000000  0.00000000  0.00000000  1
+  Ba2+  Ba1  1  0.00000000  0.50000000  0.50000000  1
+  Ba2+  Ba2  1  0.50000000  0.00000000  0.50000000  1
+  Ba2+  Ba3  1  0.50000000  0.50000000  0.00000000  1
+  Te2-  Te4  1  0.00000000  0.00000000  0.50000000  1
+  Te2-  Te5  1  0.00000000  0.50000000  0.00000000  1
+  Te2-  Te6  1  0.50000000  0.00000000  0.00000000  1
+  Te2-  Te7  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M002/SnO2.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_SnO2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.76481805
+_cell_length_b   4.76481805
+_cell_length_c   3.20749977
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   SnO2
+_chemical_formula_sum   'Sn2 O4'
+_cell_volume   72.82144217
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Sn4+  4.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Sn4+  Sn0  1  0.50000000  0.50000000  0.50000000  1
+  Sn4+  Sn1  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O2  1  0.80597230  0.19402771  0.50000000  1
+  O2-  O3  1  0.19402771  0.80597230  0.50000000  1
+  O2-  O4  1  0.30597230  0.30597230  0.00000000  1
+  O2-  O5  1  0.69402770  0.69402770  0.00000000  1

raw_data/material/M003/Ag2O.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_Ag2O
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.75399071
+_cell_length_b   4.75399071
+_cell_length_c   4.75399071
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Ag2O
+_chemical_formula_sum   'Ag4 O2'
+_cell_volume   107.44222319
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag+  1.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag+  Ag0  1  0.25000000  0.25000000  0.75000000  1
+  Ag+  Ag1  1  0.75000000  0.25000000  0.25000000  1
+  Ag+  Ag2  1  0.25000000  0.75000000  0.25000000  1
+  Ag+  Ag3  1  0.75000000  0.75000000  0.75000000  1
+  O2-  O4  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O5  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M003/AgF2.cif ADDED Viewed

	@@ -0,0 +1,43 @@

+# generated using pymatgen
+data_AgF2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   5.15029714
+_cell_length_b   5.61804978
+_cell_length_c   5.73745983
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AgF2
+_chemical_formula_sum   'Ag4 F8'
+_cell_volume   166.01125277
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag2+  2.0
+  F-  -1.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag2+  Ag0  1  0.50000000  0.00000000  0.50000000  1
+  Ag2+  Ag1  1  0.00000000  0.50000000  0.50000000  1
+  Ag2+  Ag2  1  0.50000000  0.50000000  0.00000000  1
+  Ag2+  Ag3  1  0.00000000  0.00000000  0.00000000  1
+  F-  F4  1  0.68411866  0.30511619  0.62873397  1
+  F-  F5  1  0.18411866  0.19488381  0.37126603  1
+  F-  F6  1  0.31588134  0.80511619  0.87126603  1
+  F-  F7  1  0.81588134  0.69488381  0.12873397  1
+  F-  F8  1  0.18411866  0.30511619  0.87126603  1
+  F-  F9  1  0.68411866  0.19488381  0.12873397  1
+  F-  F10  1  0.81588134  0.80511619  0.62873397  1
+  F-  F11  1  0.31588134  0.69488381  0.37126603  1

raw_data/material/M003/Al3Ir.cif ADDED Viewed

	@@ -0,0 +1,34 @@

+# generated using pymatgen
+data_Al3Ir
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.27012567
+_cell_length_b   4.27012567
+_cell_length_c   7.74077817
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Al3Ir
+_chemical_formula_sum   'Al6 Ir2'
+_cell_volume   122.23527844
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al  Al0  1  0.00000000  0.00000000  0.25000000  1
+  Al  Al1  1  0.00000000  0.00000000  0.75000000  1
+  Al  Al2  1  0.33333333  0.66666667  0.57989058  1
+  Al  Al3  1  0.66666667  0.33333333  0.07989058  1
+  Al  Al4  1  0.66666667  0.33333333  0.42010942  1
+  Al  Al5  1  0.33333333  0.66666667  0.92010942  1
+  Ir  Ir6  1  0.33333333  0.66666667  0.25000000  1
+  Ir  Ir7  1  0.66666667  0.33333333  0.75000000  1

raw_data/material/M003/AlN.cif ADDED Viewed

	@@ -0,0 +1,35 @@

+# generated using pymatgen
+data_AlN
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   3.12858814
+_cell_length_b   3.12858814
+_cell_length_c   5.01695500
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AlN
+_chemical_formula_sum   'Al2 N2'
+_cell_volume   42.52728185
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Al3+  3.0
+  N3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al3+  Al0  1  0.66666667  0.33333333  0.49928700  1
+  Al3+  Al1  1  0.33333333  0.66666667  0.99928700  1
+  N3-  N2  1  0.66666667  0.33333333  0.88071300  1
+  N3-  N3  1  0.33333333  0.66666667  0.38071300  1

raw_data/material/M003/BAs.cif ADDED Viewed

	@@ -0,0 +1,128 @@

+# generated using pymatgen
+data_BAs
+_symmetry_space_group_name_H-M   F-43m
+_cell_length_a   4.81925400
+_cell_length_b   4.81925400
+_cell_length_c   4.81925400
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   216
+_chemical_formula_structural   BAs
+_chemical_formula_sum   'B4 As4'
+_cell_volume   111.92818194
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+  2  'y, -x, -z'
+  3  '-x, -y, z'
+  4  '-y, x, -z'
+  5  'x, -y, -z'
+  6  'y, x, z'
+  7  '-x, y, -z'
+  8  '-y, -x, z'
+  9  'z, x, y'
+  10  '-z, y, -x'
+  11  'z, -x, -y'
+  12  '-z, -y, x'
+  13  '-z, x, -y'
+  14  'z, y, x'
+  15  '-z, -x, y'
+  16  'z, -y, -x'
+  17  'y, z, x'
+  18  '-x, -z, y'
+  19  '-y, z, -x'
+  20  'x, -z, -y'
+  21  '-y, -z, x'
+  22  'x, z, y'
+  23  'y, -z, -x'
+  24  '-x, z, -y'
+  25  'x+1/2, y+1/2, z'
+  26  'y+1/2, -x+1/2, -z'
+  27  '-x+1/2, -y+1/2, z'
+  28  '-y+1/2, x+1/2, -z'
+  29  'x+1/2, -y+1/2, -z'
+  30  'y+1/2, x+1/2, z'
+  31  '-x+1/2, y+1/2, -z'
+  32  '-y+1/2, -x+1/2, z'
+  33  'z+1/2, x+1/2, y'
+  34  '-z+1/2, y+1/2, -x'
+  35  'z+1/2, -x+1/2, -y'
+  36  '-z+1/2, -y+1/2, x'
+  37  '-z+1/2, x+1/2, -y'
+  38  'z+1/2, y+1/2, x'
+  39  '-z+1/2, -x+1/2, y'
+  40  'z+1/2, -y+1/2, -x'
+  41  'y+1/2, z+1/2, x'
+  42  '-x+1/2, -z+1/2, y'
+  43  '-y+1/2, z+1/2, -x'
+  44  'x+1/2, -z+1/2, -y'
+  45  '-y+1/2, -z+1/2, x'
+  46  'x+1/2, z+1/2, y'
+  47  'y+1/2, -z+1/2, -x'
+  48  '-x+1/2, z+1/2, -y'
+  49  'x+1/2, y, z+1/2'
+  50  'y+1/2, -x, -z+1/2'
+  51  '-x+1/2, -y, z+1/2'
+  52  '-y+1/2, x, -z+1/2'
+  53  'x+1/2, -y, -z+1/2'
+  54  'y+1/2, x, z+1/2'
+  55  '-x+1/2, y, -z+1/2'
+  56  '-y+1/2, -x, z+1/2'
+  57  'z+1/2, x, y+1/2'
+  58  '-z+1/2, y, -x+1/2'
+  59  'z+1/2, -x, -y+1/2'
+  60  '-z+1/2, -y, x+1/2'
+  61  '-z+1/2, x, -y+1/2'
+  62  'z+1/2, y, x+1/2'
+  63  '-z+1/2, -x, y+1/2'
+  64  'z+1/2, -y, -x+1/2'
+  65  'y+1/2, z, x+1/2'
+  66  '-x+1/2, -z, y+1/2'
+  67  '-y+1/2, z, -x+1/2'
+  68  'x+1/2, -z, -y+1/2'
+  69  '-y+1/2, -z, x+1/2'
+  70  'x+1/2, z, y+1/2'
+  71  'y+1/2, -z, -x+1/2'
+  72  '-x+1/2, z, -y+1/2'
+  73  'x, y+1/2, z+1/2'
+  74  'y, -x+1/2, -z+1/2'
+  75  '-x, -y+1/2, z+1/2'
+  76  '-y, x+1/2, -z+1/2'
+  77  'x, -y+1/2, -z+1/2'
+  78  'y, x+1/2, z+1/2'
+  79  '-x, y+1/2, -z+1/2'
+  80  '-y, -x+1/2, z+1/2'
+  81  'z, x+1/2, y+1/2'
+  82  '-z, y+1/2, -x+1/2'
+  83  'z, -x+1/2, -y+1/2'
+  84  '-z, -y+1/2, x+1/2'
+  85  '-z, x+1/2, -y+1/2'
+  86  'z, y+1/2, x+1/2'
+  87  '-z, -x+1/2, y+1/2'
+  88  'z, -y+1/2, -x+1/2'
+  89  'y, z+1/2, x+1/2'
+  90  '-x, -z+1/2, y+1/2'
+  91  '-y, z+1/2, -x+1/2'
+  92  'x, -z+1/2, -y+1/2'
+  93  '-y, -z+1/2, x+1/2'
+  94  'x, z+1/2, y+1/2'
+  95  'y, -z+1/2, -x+1/2'
+  96  '-x, z+1/2, -y+1/2'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  As3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  4  0.25000000  0.25000000  0.25000000  1
+  As3-  As1  4  0.00000000  0.00000000  0.00000000  1

raw_data/material/M003/BP.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BP
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.53214477
+_cell_length_b   4.53214477
+_cell_length_c   4.53214477
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BP
+_chemical_formula_sum   'B4 P4'
+_cell_volume   93.09177730
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  P3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  1  0.00000000  0.00000000  0.00000000  1
+  B3+  B1  1  0.00000000  0.50000000  0.50000000  1
+  B3+  B2  1  0.50000000  0.00000000  0.50000000  1
+  B3+  B3  1  0.50000000  0.50000000  0.00000000  1
+  P3-  P4  1  0.25000000  0.75000000  0.75000000  1
+  P3-  P5  1  0.25000000  0.25000000  0.25000000  1
+  P3-  P6  1  0.75000000  0.75000000  0.25000000  1
+  P3-  P7  1  0.75000000  0.25000000  0.75000000  1

raw_data/material/M003/BaTe.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BaTe
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   7.08983954
+_cell_length_b   7.08983954
+_cell_length_c   7.08983954
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BaTe
+_chemical_formula_sum   'Ba4 Te4'
+_cell_volume   356.37663148
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ba2+  2.0
+  Te2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ba2+  Ba0  1  0.00000000  0.00000000  0.00000000  1
+  Ba2+  Ba1  1  0.00000000  0.50000000  0.50000000  1
+  Ba2+  Ba2  1  0.50000000  0.00000000  0.50000000  1
+  Ba2+  Ba3  1  0.50000000  0.50000000  0.00000000  1
+  Te2-  Te4  1  0.00000000  0.00000000  0.50000000  1
+  Te2-  Te5  1  0.00000000  0.50000000  0.00000000  1
+  Te2-  Te6  1  0.50000000  0.00000000  0.00000000  1
+  Te2-  Te7  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M003/SnO2.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_SnO2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.76481805
+_cell_length_b   4.76481805
+_cell_length_c   3.20749977
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   SnO2
+_chemical_formula_sum   'Sn2 O4'
+_cell_volume   72.82144217
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Sn4+  4.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Sn4+  Sn0  1  0.50000000  0.50000000  0.50000000  1
+  Sn4+  Sn1  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O2  1  0.80597230  0.19402771  0.50000000  1
+  O2-  O3  1  0.19402771  0.80597230  0.50000000  1
+  O2-  O4  1  0.30597230  0.30597230  0.00000000  1
+  O2-  O5  1  0.69402770  0.69402770  0.00000000  1

raw_data/material/M004/Ag2O.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_Ag2O
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.75399071
+_cell_length_b   4.75399071
+_cell_length_c   4.75399071
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Ag2O
+_chemical_formula_sum   'Ag4 O2'
+_cell_volume   107.44222319
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag+  1.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag+  Ag0  1  0.25000000  0.25000000  0.75000000  1
+  Ag+  Ag1  1  0.75000000  0.25000000  0.25000000  1
+  Ag+  Ag2  1  0.25000000  0.75000000  0.25000000  1
+  Ag+  Ag3  1  0.75000000  0.75000000  0.75000000  1
+  O2-  O4  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O5  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M004/AgF2.cif ADDED Viewed

	@@ -0,0 +1,43 @@

+# generated using pymatgen
+data_AgF2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   5.15029714
+_cell_length_b   5.61804978
+_cell_length_c   5.73745983
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AgF2
+_chemical_formula_sum   'Ag4 F8'
+_cell_volume   166.01125277
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ag2+  2.0
+  F-  -1.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ag2+  Ag0  1  0.50000000  0.00000000  0.50000000  1
+  Ag2+  Ag1  1  0.00000000  0.50000000  0.50000000  1
+  Ag2+  Ag2  1  0.50000000  0.50000000  0.00000000  1
+  Ag2+  Ag3  1  0.00000000  0.00000000  0.00000000  1
+  F-  F4  1  0.68411866  0.30511619  0.62873397  1
+  F-  F5  1  0.18411866  0.19488381  0.37126603  1
+  F-  F6  1  0.31588134  0.80511619  0.87126603  1
+  F-  F7  1  0.81588134  0.69488381  0.12873397  1
+  F-  F8  1  0.18411866  0.30511619  0.87126603  1
+  F-  F9  1  0.68411866  0.19488381  0.12873397  1
+  F-  F10  1  0.81588134  0.80511619  0.62873397  1
+  F-  F11  1  0.31588134  0.69488381  0.37126603  1

raw_data/material/M004/Al3Ir.cif ADDED Viewed

	@@ -0,0 +1,34 @@

+# generated using pymatgen
+data_Al3Ir
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.27012567
+_cell_length_b   4.27012567
+_cell_length_c   7.74077817
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   Al3Ir
+_chemical_formula_sum   'Al6 Ir2'
+_cell_volume   122.23527844
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al  Al0  1  0.00000000  0.00000000  0.25000000  1
+  Al  Al1  1  0.00000000  0.00000000  0.75000000  1
+  Al  Al2  1  0.33333333  0.66666667  0.57989058  1
+  Al  Al3  1  0.66666667  0.33333333  0.07989058  1
+  Al  Al4  1  0.66666667  0.33333333  0.42010942  1
+  Al  Al5  1  0.33333333  0.66666667  0.92010942  1
+  Ir  Ir6  1  0.33333333  0.66666667  0.25000000  1
+  Ir  Ir7  1  0.66666667  0.33333333  0.75000000  1

raw_data/material/M004/AlN.cif ADDED Viewed

	@@ -0,0 +1,35 @@

+# generated using pymatgen
+data_AlN
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   3.12858814
+_cell_length_b   3.12858814
+_cell_length_c   5.01695500
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   120.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   AlN
+_chemical_formula_sum   'Al2 N2'
+_cell_volume   42.52728185
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Al3+  3.0
+  N3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Al3+  Al0  1  0.66666667  0.33333333  0.49928700  1
+  Al3+  Al1  1  0.33333333  0.66666667  0.99928700  1
+  N3-  N2  1  0.66666667  0.33333333  0.88071300  1
+  N3-  N3  1  0.33333333  0.66666667  0.38071300  1

raw_data/material/M004/BAs.cif ADDED Viewed

	@@ -0,0 +1,128 @@

+# generated using pymatgen
+data_BAs
+_symmetry_space_group_name_H-M   F-43m
+_cell_length_a   4.81925400
+_cell_length_b   4.81925400
+_cell_length_c   4.81925400
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   216
+_chemical_formula_structural   BAs
+_chemical_formula_sum   'B4 As4'
+_cell_volume   111.92818194
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+  2  'y, -x, -z'
+  3  '-x, -y, z'
+  4  '-y, x, -z'
+  5  'x, -y, -z'
+  6  'y, x, z'
+  7  '-x, y, -z'
+  8  '-y, -x, z'
+  9  'z, x, y'
+  10  '-z, y, -x'
+  11  'z, -x, -y'
+  12  '-z, -y, x'
+  13  '-z, x, -y'
+  14  'z, y, x'
+  15  '-z, -x, y'
+  16  'z, -y, -x'
+  17  'y, z, x'
+  18  '-x, -z, y'
+  19  '-y, z, -x'
+  20  'x, -z, -y'
+  21  '-y, -z, x'
+  22  'x, z, y'
+  23  'y, -z, -x'
+  24  '-x, z, -y'
+  25  'x+1/2, y+1/2, z'
+  26  'y+1/2, -x+1/2, -z'
+  27  '-x+1/2, -y+1/2, z'
+  28  '-y+1/2, x+1/2, -z'
+  29  'x+1/2, -y+1/2, -z'
+  30  'y+1/2, x+1/2, z'
+  31  '-x+1/2, y+1/2, -z'
+  32  '-y+1/2, -x+1/2, z'
+  33  'z+1/2, x+1/2, y'
+  34  '-z+1/2, y+1/2, -x'
+  35  'z+1/2, -x+1/2, -y'
+  36  '-z+1/2, -y+1/2, x'
+  37  '-z+1/2, x+1/2, -y'
+  38  'z+1/2, y+1/2, x'
+  39  '-z+1/2, -x+1/2, y'
+  40  'z+1/2, -y+1/2, -x'
+  41  'y+1/2, z+1/2, x'
+  42  '-x+1/2, -z+1/2, y'
+  43  '-y+1/2, z+1/2, -x'
+  44  'x+1/2, -z+1/2, -y'
+  45  '-y+1/2, -z+1/2, x'
+  46  'x+1/2, z+1/2, y'
+  47  'y+1/2, -z+1/2, -x'
+  48  '-x+1/2, z+1/2, -y'
+  49  'x+1/2, y, z+1/2'
+  50  'y+1/2, -x, -z+1/2'
+  51  '-x+1/2, -y, z+1/2'
+  52  '-y+1/2, x, -z+1/2'
+  53  'x+1/2, -y, -z+1/2'
+  54  'y+1/2, x, z+1/2'
+  55  '-x+1/2, y, -z+1/2'
+  56  '-y+1/2, -x, z+1/2'
+  57  'z+1/2, x, y+1/2'
+  58  '-z+1/2, y, -x+1/2'
+  59  'z+1/2, -x, -y+1/2'
+  60  '-z+1/2, -y, x+1/2'
+  61  '-z+1/2, x, -y+1/2'
+  62  'z+1/2, y, x+1/2'
+  63  '-z+1/2, -x, y+1/2'
+  64  'z+1/2, -y, -x+1/2'
+  65  'y+1/2, z, x+1/2'
+  66  '-x+1/2, -z, y+1/2'
+  67  '-y+1/2, z, -x+1/2'
+  68  'x+1/2, -z, -y+1/2'
+  69  '-y+1/2, -z, x+1/2'
+  70  'x+1/2, z, y+1/2'
+  71  'y+1/2, -z, -x+1/2'
+  72  '-x+1/2, z, -y+1/2'
+  73  'x, y+1/2, z+1/2'
+  74  'y, -x+1/2, -z+1/2'
+  75  '-x, -y+1/2, z+1/2'
+  76  '-y, x+1/2, -z+1/2'
+  77  'x, -y+1/2, -z+1/2'
+  78  'y, x+1/2, z+1/2'
+  79  '-x, y+1/2, -z+1/2'
+  80  '-y, -x+1/2, z+1/2'
+  81  'z, x+1/2, y+1/2'
+  82  '-z, y+1/2, -x+1/2'
+  83  'z, -x+1/2, -y+1/2'
+  84  '-z, -y+1/2, x+1/2'
+  85  '-z, x+1/2, -y+1/2'
+  86  'z, y+1/2, x+1/2'
+  87  '-z, -x+1/2, y+1/2'
+  88  'z, -y+1/2, -x+1/2'
+  89  'y, z+1/2, x+1/2'
+  90  '-x, -z+1/2, y+1/2'
+  91  '-y, z+1/2, -x+1/2'
+  92  'x, -z+1/2, -y+1/2'
+  93  '-y, -z+1/2, x+1/2'
+  94  'x, z+1/2, y+1/2'
+  95  'y, -z+1/2, -x+1/2'
+  96  '-x, z+1/2, -y+1/2'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  As3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  4  0.25000000  0.25000000  0.25000000  1
+  As3-  As1  4  0.00000000  0.00000000  0.00000000  1

raw_data/material/M004/BP.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BP
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.53214477
+_cell_length_b   4.53214477
+_cell_length_c   4.53214477
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BP
+_chemical_formula_sum   'B4 P4'
+_cell_volume   93.09177730
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  B3+  3.0
+  P3-  -3.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  B3+  B0  1  0.00000000  0.00000000  0.00000000  1
+  B3+  B1  1  0.00000000  0.50000000  0.50000000  1
+  B3+  B2  1  0.50000000  0.00000000  0.50000000  1
+  B3+  B3  1  0.50000000  0.50000000  0.00000000  1
+  P3-  P4  1  0.25000000  0.75000000  0.75000000  1
+  P3-  P5  1  0.25000000  0.25000000  0.25000000  1
+  P3-  P6  1  0.75000000  0.75000000  0.25000000  1
+  P3-  P7  1  0.75000000  0.25000000  0.75000000  1

raw_data/material/M004/BaTe.cif ADDED Viewed

	@@ -0,0 +1,39 @@

+# generated using pymatgen
+data_BaTe
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   7.08983954
+_cell_length_b   7.08983954
+_cell_length_c   7.08983954
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   BaTe
+_chemical_formula_sum   'Ba4 Te4'
+_cell_volume   356.37663148
+_cell_formula_units_Z   4
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Ba2+  2.0
+  Te2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Ba2+  Ba0  1  0.00000000  0.00000000  0.00000000  1
+  Ba2+  Ba1  1  0.00000000  0.50000000  0.50000000  1
+  Ba2+  Ba2  1  0.50000000  0.00000000  0.50000000  1
+  Ba2+  Ba3  1  0.50000000  0.50000000  0.00000000  1
+  Te2-  Te4  1  0.00000000  0.00000000  0.50000000  1
+  Te2-  Te5  1  0.00000000  0.50000000  0.00000000  1
+  Te2-  Te6  1  0.50000000  0.00000000  0.00000000  1
+  Te2-  Te7  1  0.50000000  0.50000000  0.50000000  1

raw_data/material/M004/SnO2.cif ADDED Viewed

	@@ -0,0 +1,37 @@

+# generated using pymatgen
+data_SnO2
+_symmetry_space_group_name_H-M   'P 1'
+_cell_length_a   4.76481805
+_cell_length_b   4.76481805
+_cell_length_c   3.20749977
+_cell_angle_alpha   90.00000000
+_cell_angle_beta   90.00000000
+_cell_angle_gamma   90.00000000
+_symmetry_Int_Tables_number   1
+_chemical_formula_structural   SnO2
+_chemical_formula_sum   'Sn2 O4'
+_cell_volume   72.82144217
+_cell_formula_units_Z   2
+loop_
+ _symmetry_equiv_pos_site_id
+ _symmetry_equiv_pos_as_xyz
+  1  'x, y, z'
+loop_
+ _atom_type_symbol
+ _atom_type_oxidation_number
+  Sn4+  4.0
+  O2-  -2.0
+loop_
+ _atom_site_type_symbol
+ _atom_site_label
+ _atom_site_symmetry_multiplicity
+ _atom_site_fract_x
+ _atom_site_fract_y
+ _atom_site_fract_z
+ _atom_site_occupancy
+  Sn4+  Sn0  1  0.50000000  0.50000000  0.50000000  1
+  Sn4+  Sn1  1  0.00000000  0.00000000  0.00000000  1
+  O2-  O2  1  0.80597230  0.19402771  0.50000000  1
+  O2-  O3  1  0.19402771  0.80597230  0.50000000  1
+  O2-  O4  1  0.30597230  0.30597230  0.00000000  1
+  O2-  O5  1  0.69402770  0.69402770  0.00000000  1

raw_data/material/M006/phase_diagram_vis_mp.py ADDED Viewed

	@@ -0,0 +1,40 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+import pymatviz as pmv
+from pymatviz.structure_viz import structure_2d_plotly, structure_2d
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.analysis.phase_diagram import PhaseDiagram, PDPlotter
+from pymatgen.entries.mixing_scheme import MaterialsProjectDFTMixingScheme
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+for mid in MID:
+    if os.path.exists(f"{mid}-phase-diagram.png"):
+        print(f"{mid}-phase-diagram.png already exists, skipping...")
+        continue
+    with MPRester(MP_API_KEY) as mpr:
+        all_elements = set()
+        structure = mpr.get_structure_by_material_id(mid)
+        all_elements.update([str(el) for el in structure.composition.elements])
+        entries = mpr.get_entries_in_chemsys(elements=list(all_elements),
+                                            additional_criteria={"thermo_types": ["GGA_GGA+U", "R2SCAN"]})
+    scheme = MaterialsProjectDFTMixingScheme()
+    corrected_entries = scheme.process_entries(entries)
+    pd = PhaseDiagram(corrected_entries)
+    fig = PDPlotter(pd).get_plot()
+    fig.layout.paper_bgcolor = "rgba(255, 255, 255, 1.0)"
+    fig.write_image(f"{mid}-phase-diagram.png", scale=2)

raw_data/material/M008/electronic_bands_dos_vis_mp.py ADDED Viewed

	@@ -0,0 +1,33 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+import pymatviz as pmv
+from pymatviz.structure_viz import structure_2d_plotly, structure_2d
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.electronic_structure.plotter import BSDOSPlotter
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+for mid in MID:
+    if os.path.exists(f"{mid}-eb-dos.png"):
+        print(f"{mid}-eb-dos.png already exists, skipping...")
+        continue
+    with MPRester(MP_API_KEY) as mpr:
+        bs = mpr.get_bandstructure_by_material_id(mid)
+        dos = mpr.get_dos_by_material_id(mid)
+    plotter = BSDOSPlotter(cb_energy_range=8)
+    fig = plt.figure()
+    fig = plotter.get_plot(bs, dos)
+    plt.tight_layout()
+    plt.savefig(f"{mid}-eb-dos.png", dpi=300, bbox_inches="tight")

raw_data/material/M010/electronic_bands_dos_vis_mp.py ADDED Viewed

	@@ -0,0 +1,33 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+import pymatviz as pmv
+from pymatviz.structure_viz import structure_2d_plotly, structure_2d
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.electronic_structure.plotter import BSDOSPlotter
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+for mid in MID:
+    if os.path.exists(f"{mid}-eb-dos.png"):
+        print(f"{mid}-eb-dos.png already exists, skipping...")
+        continue
+    with MPRester(MP_API_KEY) as mpr:
+        bs = mpr.get_bandstructure_by_material_id(mid)
+        dos = mpr.get_dos_by_material_id(mid)
+    plotter = BSDOSPlotter(cb_energy_range=8)
+    fig = plt.figure()
+    fig = plotter.get_plot(bs, dos)
+    plt.tight_layout()
+    plt.savefig(f"{mid}-eb-dos.png", dpi=300, bbox_inches="tight")

raw_data/material/M020/xrd_vis_mp.py ADDED Viewed

	@@ -0,0 +1,97 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+from pymatgen.analysis.diffraction.xrd import XRDCalculator
+import pymatviz as pmv
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+xrd_calculator = XRDCalculator(wavelength='CuKa')
+patterns = {}
+for mid in tqdm(MID):
+    # if os.path.exists(f"{mid}-xrd.png"):
+    #     print(f"{mid}-xrd.png already exists, skipping...")
+    #     continue
+    with MPRester(MP_API_KEY) as mpr:
+        structure = mpr.get_structure_by_material_id(mid)
+    sga = SpacegroupAnalyzer(structure)
+    conventional_structure = sga.get_conventional_standard_structure()
+    xrd_pattern = xrd_calculator.get_pattern(conventional_structure, scaled=False)
+    patterns[mid] = xrd_pattern
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    x = xrd_pattern.x
+    y = xrd_pattern.y / np.max(xrd_pattern.y) * 100
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{mid}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()
+for _ in tqdm(range(5)):
+    mids = np.random.choice(MID, 3, replace=False)
+    mids = sorted(mids)
+    combined_pattern = {}
+    for mid in mids:
+        pattern = patterns[mid]
+        for two_theta, intensity in zip(pattern.x, pattern.y):
+            if two_theta in combined_pattern:
+                combined_pattern[two_theta] += intensity
+            else:
+                combined_pattern[two_theta] = intensity
+    combined_pattern_list = [(k, v) for k, v in combined_pattern.items()]
+    combined_pattern_list.sort(key=lambda x: x[0])
+    x = np.array([item[0] for item in combined_pattern_list])
+    y = np.array([item[1] for item in combined_pattern_list])
+    y = y / np.max(y) * 100
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{'_'.join(mids)}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()

raw_data/material/M021/xrd_vis_mp.py ADDED Viewed

	@@ -0,0 +1,97 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+from pymatgen.analysis.diffraction.xrd import XRDCalculator
+import pymatviz as pmv
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+xrd_calculator = XRDCalculator(wavelength='CuKa')
+patterns = {}
+for mid in tqdm(MID):
+    # if os.path.exists(f"{mid}-xrd.png"):
+    #     print(f"{mid}-xrd.png already exists, skipping...")
+    #     continue
+    with MPRester(MP_API_KEY) as mpr:
+        structure = mpr.get_structure_by_material_id(mid)
+    sga = SpacegroupAnalyzer(structure)
+    conventional_structure = sga.get_conventional_standard_structure()
+    xrd_pattern = xrd_calculator.get_pattern(conventional_structure, scaled=False)
+    patterns[mid] = xrd_pattern
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    x = xrd_pattern.x
+    y = xrd_pattern.y / np.max(xrd_pattern.y) * 100
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{mid}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()
+for _ in tqdm(range(5)):
+    mids = np.random.choice(MID, 3, replace=False)
+    mids = sorted(mids)
+    combined_pattern = {}
+    for mid in mids:
+        pattern = patterns[mid]
+        for two_theta, intensity in zip(pattern.x, pattern.y):
+            if two_theta in combined_pattern:
+                combined_pattern[two_theta] += intensity
+            else:
+                combined_pattern[two_theta] = intensity
+    combined_pattern_list = [(k, v) for k, v in combined_pattern.items()]
+    combined_pattern_list.sort(key=lambda x: x[0])
+    x = np.array([item[0] for item in combined_pattern_list])
+    y = np.array([item[1] for item in combined_pattern_list])
+    y = y / np.max(y) * 100
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{'_'.join(mids)}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()

raw_data/material/M022/xrd_vis_mp.py ADDED Viewed

	@@ -0,0 +1,97 @@

+import os
+from matminer.datasets import load_dataset
+from mp_api.client import MPRester
+from pymatgen.analysis.diffraction.xrd import XRDCalculator
+import pymatviz as pmv
+from pymatviz.enums import ElemColorScheme, Key
+from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from tqdm import tqdm
+MP_API_KEY = ""
+MID = ["mp-353", "mp-661", "mp-856", "mp-1000", "mp-1479", "mp-2284", "mp-2294", "mp-10044", "mp-10086", "mp-10910", "mp-18905", "mp-23231", "mp-36526", "mp-861883", "mp-862786"]
+xrd_calculator = XRDCalculator(wavelength='CuKa')
+patterns = {}
+for mid in tqdm(MID):
+    # if os.path.exists(f"{mid}-xrd.png"):
+    #     print(f"{mid}-xrd.png already exists, skipping...")
+    #     continue
+    with MPRester(MP_API_KEY) as mpr:
+        structure = mpr.get_structure_by_material_id(mid)
+    sga = SpacegroupAnalyzer(structure)
+    conventional_structure = sga.get_conventional_standard_structure()
+    xrd_pattern = xrd_calculator.get_pattern(conventional_structure, scaled=False)
+    patterns[mid] = xrd_pattern
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    x = xrd_pattern.x
+    y = xrd_pattern.y / np.max(xrd_pattern.y) * 100
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{mid}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()
+for _ in tqdm(range(5)):
+    mids = np.random.choice(MID, 3, replace=False)
+    mids = sorted(mids)
+    combined_pattern = {}
+    for mid in mids:
+        pattern = patterns[mid]
+        for two_theta, intensity in zip(pattern.x, pattern.y):
+            if two_theta in combined_pattern:
+                combined_pattern[two_theta] += intensity
+            else:
+                combined_pattern[two_theta] = intensity
+    combined_pattern_list = [(k, v) for k, v in combined_pattern.items()]
+    combined_pattern_list.sort(key=lambda x: x[0])
+    x = np.array([item[0] for item in combined_pattern_list])
+    y = np.array([item[1] for item in combined_pattern_list])
+    y = y / np.max(y) * 100
+    plt.figure(figsize=(12, 6))
+    bar_width = 0.5
+    plt.bar(x, y, width=bar_width, color='black')
+    plt.xlabel('2 Theta (degrees)', fontsize=14)
+    plt.ylabel('Intensity (a.u.)', fontsize=14)
+    plt.xticks(fontsize=12)
+    plt.yticks(fontsize=12)
+    plt.grid(axis='y', linestyle='--', alpha=0.7)
+    plt.gca().spines['top'].set_linewidth(0.5)
+    plt.gca().spines['right'].set_linewidth(0.5)
+    plt.tight_layout()
+    plt.savefig(f"{'_'.join(mids)}-xrd.png", dpi=300, bbox_inches='tight')
+    plt.close()