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Browse files- README.md +34 -0
- tr_expr_among_gene.png +3 -0
- tr_per_gene.png +3 -0
README.md
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This is a dataset describes transcript expression based on the data
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from [GTEX](https://gtexportal.org/home/downloads/adult-gtex/bulk_tissue_expression) (
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file: GTEx_Analysis_2017-06-05_v8_RSEMv1.3.0_transcript_tpm.gct.gz )
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It measures the transcription level of each human transcripts ( 4-5 per genes ) in every
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31 tissues (for the V1, 50 more specific tissues for the V2).
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expression values are log-transformed ( x -> log(x+1) )
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Each sample of the dataset correspond to:
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* A unique (gene_id, transcript_id) pair
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* the quantified level of expressions across several tissues
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* the DNA sequence
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* the RNA sequence (ATCG format)
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* the protein sequence
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## Splits Statistics
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| | train | test | evaluation |
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|--------------|-------|------|------------|
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| # Genes | 17648 | 980 | 981 |
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| # Transcript | 82205 | 4718 | 4318 |
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<img src="./tr_per_gene.png" width="512"/>
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<img src="./tr_expr_among_gene.png" width="512"/>
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### NOTE
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We currently only included coding genes, there there the RNA is actually mRNA
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tr_expr_among_gene.png
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![]() |
Git LFS Details
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tr_per_gene.png
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![]() |
Git LFS Details
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