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  1. README.md +34 -0
  2. tr_expr_among_gene.png +3 -0
  3. tr_per_gene.png +3 -0
README.md ADDED
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+ This is a dataset describes transcript expression based on the data
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+ from [GTEX](https://gtexportal.org/home/downloads/adult-gtex/bulk_tissue_expression) (
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+ file: GTEx_Analysis_2017-06-05_v8_RSEMv1.3.0_transcript_tpm.gct.gz )
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+
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+ It measures the transcription level of each human transcripts ( 4-5 per genes ) in every
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+ 31 tissues (for the V1, 50 more specific tissues for the V2).
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+
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+ expression values are log-transformed ( x -> log(x+1) )
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+ Each sample of the dataset correspond to:
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+
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+ * A unique (gene_id, transcript_id) pair
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+ * the quantified level of expressions across several tissues
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+ * the DNA sequence
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+ * the RNA sequence (ATCG format)
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+ * the protein sequence
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+
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+ ## Splits Statistics
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+
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+ | | train | test | evaluation |
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+ |--------------|-------|------|------------|
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+ | # Genes | 17648 | 980 | 981 |
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+ | # Transcript | 82205 | 4718 | 4318 |
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+
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+
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+ <img src="./tr_per_gene.png" width="512"/>
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+ <img src="./tr_expr_among_gene.png" width="512"/>
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+
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+ ### NOTE
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+
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+ We currently only included coding genes, there there the RNA is actually mRNA
tr_expr_among_gene.png ADDED

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