fix

multi_omics_transcript_expression.py

@@ -307,7 +307,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
             start = coordinates_row["position"] - 1  # -1 since vcf coords are 1-based
 
             chromosome = coordinates_row["chr"]
-            labels_row = coordinates_row.iloc[LABELS_V1]
+            labels_row = coordinates_row[LABELS_V1]
             padded_sequence = pad_sequence(
                 chromosome=self.reference_genome[chromosome],
                 start=start,
@@ -318,7 +318,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
             if padded_sequence:
                 yield key, {
                     "labels_name": labels_name,
-                    "labels": labels_row,
+                    "labels": labels_row.to_numpy(),
                     "DNA": standardize_sequence(padded_sequence),
                     "chromosome": re.sub("chr", "", chromosome),
                     "RNA": coordinates_row["RNA"],