fix: use right csv

multi_omics_transcript_expression.py

@@ -294,7 +294,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
         self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
 
         self.df_csv_file = dl_manager.download_and_extract(
-            "transcript_expression/GTEx_tpm_multiomics.csv"
+            "transcript_expression/GTEx_final_tpm_multiomics.csv"
         )
 
         return super().split_generators(dl_manager, cache_dir_root)
@@ -338,9 +338,9 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
                     "DNA": standardize_sequence(padded_sequence),
                     "chromosome": re.sub("chr", "", chromosome),
                     "RNA": coordinates_row["RNA"],
-                    # "five_prime_utr": coordinates_row["5UTR"],
-                    # "coding_sequence": coordinates_row["CDS"],
-                    # "three_prime_utr": coordinates_row["3UTR"],
+                    "five_prime_utr": coordinates_row["5UTR"],
+                    "coding_sequence": coordinates_row["CDS"],
+                    "three_prime_utr": coordinates_row["3UTR"],
                     "Protein": coordinates_row["Protein"],
                 }
                 key += 1