fix

multi_omics_transcript_expression.py

@@ -212,15 +212,17 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
         length and standardized before returning.
         """
         coordinates_df = pd.read_csv(self.coordinate_csv_file)
-        labels_name = coordinates_df.columns[2:]
-        coordinates_split_df = coordinates_df[coordinates_df["set"] == split]
+        labels_df = pd.read_csv(self.labels_csv_file)
+        labels_name = labels_df.columns[2:]
+
+        coordinates_split_df = coordinates_df[coordinates_df["split"] == split]
 
         key = 0
         for idx, coordinates_row in coordinates_split_df.iterrows():
             start = coordinates_row["position"] - 1  # -1 since vcf coords are 1-based
 
             chromosome = coordinates_row["chr"]
-            labels_row = coordinates_row.iloc[idx].values[2:]
+            labels_row = labels_df.iloc[idx].values[2:]
             padded_sequence = pad_sequence(
                 chromosome=self.reference_genome[chromosome],
                 start=start,