lgonzalez1 commited on
Commit
568d105
·
1 Parent(s): 23d70bd

add new dataset with correct UTRs

Browse files
multi_omics_transcript_expression.py CHANGED
@@ -338,9 +338,9 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  "DNA": standardize_sequence(padded_sequence),
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  "chromosome": re.sub("chr", "", chromosome),
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  "RNA": coordinates_row["RNA"],
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- "five_prime_utr": coordinates_row["TR"],
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  "coding_sequence": coordinates_row["CDS"],
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- "three_prime_utr": coordinates_row["TR"],
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  "Protein": coordinates_row["Protein"],
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  }
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  key += 1
 
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  "DNA": standardize_sequence(padded_sequence),
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  "chromosome": re.sub("chr", "", chromosome),
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  "RNA": coordinates_row["RNA"],
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+ "five_prime_utr": coordinates_row["5UTR"],
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  "coding_sequence": coordinates_row["CDS"],
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+ "three_prime_utr": coordinates_row["3UTR"],
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  "Protein": coordinates_row["Protein"],
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  }
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  key += 1