GRichard513
commited on
Commit
·
0121321
1
Parent(s):
34593b4
fix: use tpm instead of read counts
Browse files
multi_omics_transcript_expression.py
CHANGED
@@ -294,7 +294,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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self.df_csv_file = dl_manager.download_and_extract(
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-
"transcript_expression/
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)
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return super().split_generators(dl_manager, cache_dir_root)
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self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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self.df_csv_file = dl_manager.download_and_extract(
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+
"transcript_expression/GTEx_tpm_multiomics.csv"
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)
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return super().split_generators(dl_manager, cache_dir_root)
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