GRichard513 commited on
Commit
0121321
·
1 Parent(s): 34593b4

fix: use tpm instead of read counts

Browse files
multi_omics_transcript_expression.py CHANGED
@@ -294,7 +294,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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  self.df_csv_file = dl_manager.download_and_extract(
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- "transcript_expression/GTEx_v1_multiomics.csv"
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  )
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  return super().split_generators(dl_manager, cache_dir_root)
 
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  self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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  self.df_csv_file = dl_manager.download_and_extract(
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+ "transcript_expression/GTEx_tpm_multiomics.csv"
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  )
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  return super().split_generators(dl_manager, cache_dir_root)